Evidence map›Paper›PMID 16051805›Full record

ArticleJournal of virology2005

Hepatitis C virus internal ribosome entry site-dependent translation in Saccharomyces cerevisiae is independent of polypyrimidine tract-binding protein, poly(rC)-binding protein 2, and La protein.

Amy B Rosenfeld, Vincent R Racaniello

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. Synthetic polycistronic sequences in eukaryotes.Synthetic and systems biotechnology · 2021
    Review
  4. Review
  5. Article
  6. Review
  7. Base pairing between hepatitis C virus RNA and 18S rRNA is required for IRES-dependent translation initiation in vivo.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Zuotin, a DnaJ molecular chaperone, stimulates cap-independent translation in yeast.Biochemical and biophysical research communications · 2006
    Article
  14. Review
  15. Article
  16. Article
  17. Hepatitis c virus genotype 4 replication in the hepatocellular carcinoma cell line HepG2/C3A.Saudi journal of gastroenterology : official journal of the Saudi Gastroenterology Association
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Amy B RosenfeldDepartment of Microbiology, Columbia University College of Physicians & Surgeons, 701 W. 168th St., New York, New York 10032, USA.
Vincent R Racaniello
Columbia University · US

Funding

TRAINING PROGRAM IN MICROBIOLOGY FOR INFECTIOUS DISEASEST32AI007161 · NIAID · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI FIDOCK, DAVID A · 1985 to 2008
$1.9M
Cell Proteins Required for Function of the IRESR21AI050016 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI RACANIELLO, VINCENT R · 2001 to 2001
$238k
NIAID NIH HHS N01 AI050016NIAID NIH HHS R01AI50016NIAID NIH HHS T32 AI007161NIAID NIH HHS T32AI07161
6 · The paper itself

Abstract

Translation initiation of some viral and cellular mRNAs occurs by ribosome binding to an internal ribosome entry site (IRES). Internal initiation mediated by the hepatitis C virus (HCV) IRES in Saccharomyces cerevisiae was shown by translation of the second open reading frame in a bicistronic mRNA. Introduction of a single base change in the HCV IRES, known to abrogate internal initiation in mammalian cells, abolished translation of the second open reading frame. Internal initiation mediated by the HCV IRES was independent of the nonsense-mediated decay pathway and the cap binding protein eIF4E, indicating that translation is not a result of mRNA degradation or 5'-end-dependent initiation. Human La protein binds the HCV IRES and is required for efficient internal initiation. Disruption of the S. cerevisiae genes that encode La protein orthologs and synthesis of wild-type human La protein in yeast had no effect on HCV IRES-dependent translation. Polypyrimidine tract-binding protein (Ptb) and poly-(rC)-binding protein 2 (Pcbp2), which may be required for HCV IRES-dependent initiation in mammalian cells, are not encoded within the S. cerevisiae genome. HCV IRES-dependent translation in S. cerevisiae was independent of human Pcbp2 protein and stimulated by the presence of human Ptb protein. These findings demonstrate that the genome of S. cerevisiae encodes all proteins necessary for internal initiation of translation mediated by the HCV IRES.

Indexed as

Protein BiosynthesisAutoantigensBase SequenceDNA-Binding ProteinsHepacivirusHumansMolecular Sequence DataPolypyrimidine Tract-Binding ProteinRibonucleoproteinsRibosomesRNA-Binding ProteinsRNA SplicingSaccharomyces cerevisiaeSS-B AntigenTranscription FactorsAutoantigensDNA-Binding ProteinsPCBP2 protein, humanPolypyrimidine Tract-Binding ProteinRibonucleoproteinsRNA-Binding ProteinsSS-B AntigenTranscription Factors

Identifiers

PMID16051805
PMCPMC1182649
OpenAlexW2106999473

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.