Evidence map›Paper›PMID 16051804›Full record

ArticleJournal of virology2005

Human immunodeficiency virus type 1 env clones from acute and early subtype B infections for standardized assessments of vaccine-elicited neutralizing antibodies.

Ming Li, Feng Gao, John R Mascola, Leonidas Stamatatos, Victoria R Polonis, Marguerite Koutsoukos, Gerald Voss, Paul Goepfert, Peter Gilbert, Kelli M Greene and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 839 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
839citing papers in PubMed, 1 pooled it
14.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

839 citing papers in PubMed, 1 synthesis or guideline pooled it, 1,085 citations in OpenAlex.

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779 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 8 institutions in 3 countries.

Ming LiDepartment of Surgery, Duke University Medical Center, Durham, NC 27710, USA.
Feng Gao
John R Mascola
Leonidas Stamatatos
Victoria R Polonis
Marguerite Koutsoukos
Gerald Voss
Paul Goepfert
Peter Gilbert
Kelli M Greene
Miroslawa Bilska
Denise L Kothe
Jesus F Salazar-Gonzalez
Xiping Wei
Julie M Decker
Beatrice H Hahn
David C Montefiori
University of Alabama at Birmingham · USDuke Medical Center · USCenter for Infectious Disease Research · USGlaxoSmithKline (Belgium) · BEGlaxoSmithKline (United Kingdom) · GBHenry M. Jackson Foundation · USNational Institutes of Health · USUniversity of Washington · US

Funding

Virology CoreP30AI027767 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Paul A. Goepfert · 1988 to 2026
$84.1M
VIROLOGY COREP30AI027742 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI BORKOWSKY, WILLIAM · 1989 to 2010
$19.4M
UAB AIEDRP: Immune Control and Escape in Acute InfectionU01AI041530 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KILBY, JOHN MICHAEL · 1997 to 2006
$7.0M
VACCINE EFFICACY OF MODIFIED HIV ENVELOPESR01AI047708 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI STAMATATOS, LEONIDAS · 2000 to 2010
$5.0M
GENETIC VARIATION OG HIV AND RELATED LENTIVIRUSESN01AI085338 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI HAHN, BEATRICE H · 1998 to 2000
$680k
Vaccine Efficacy of Modified HIV EnvelopesR56AI047708 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI STAMATATOS, LEONIDAS · 2012 to 2012
$540k
Optimizing Measurement Of Hiv-1 Neutralization Using A FZ01AI005010 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI MASCOLA, JOHN R · 2002 to 2008
$538k
Preclinical Evaluation Of Neutralizing Antibodies Elicited by HIV-1 ImmunogensZ01AI005012 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI MASCOLA, JOHN R · 2002 to 2008
$538k
Universal Env Immunogen for all HIV-1 SubtypesR21AI055386 · NIAID · DUKE UNIVERSITY · PI GAO, FENG · 2003 to 2004
$462k
NIAID NIH HHS AI055386NIAID NIH HHS AI27742NIAID NIH HHS AI27767NIAID NIH HHS AI41530NIAID NIH HHS AI46705NIAID NIH HHS AI47708NIAID NIH HHS AI54497NIAID NIH HHS AI85338NIAID NIH HHS N01 AI030034NIAID NIH HHS N01 AI085338NIAID NIH HHS P30 AI027742NIAID NIH HHS P30 AI027767NIAID NIH HHS R01 AI047708NIAID NIH HHS R21 AI055386NIAID NIH HHS R56 AI047708NIAID NIH HHS U01 AI041530
6 · The paper itself

Abstract

Induction of broadly cross-reactive neutralizing antibodies is a high priority for AIDS vaccine development but one that has proven difficult to be achieved. While most immunogens generate antibodies that neutralize a subset of T-cell-line-adapted strains of human immunodeficiency virus type 1 (HIV-1), none so far have generated a potent, broadly cross-reactive response against primary isolates of the virus. Even small increments in immunogen improvement leading to increases in neutralizing antibody titers and cross-neutralizing activity would accelerate vaccine development; however, a lack of uniformity in target strains used by different investigators to assess cross-neutralization has made the comparison of vaccine-induced antibody responses difficult. Thus, there is an urgent need to establish standard panels of HIV-1 reference strains for wide distribution. To facilitate this, full-length gp160 genes were cloned from acute and early subtype B infections and characterized for use as reference reagents to assess neutralizing antibodies against clade B HIV-1. Individual gp160 clones were screened for infectivity as Env-pseudotyped viruses in a luciferase reporter gene assay in JC53-BL (TZM-bl) cells. Functional env clones were sequenced and their neutralization phenotypes characterized by using soluble CD4, monoclonal antibodies, and serum samples from infected individuals and noninfected recipients of a recombinant gp120 vaccine. Env clones from 12 R5 primary HIV-1 isolates were selected that were not unusually sensitive or resistant to neutralization and comprised a wide spectrum of genetic, antigenic, and geographic diversity. These reference reagents will facilitate proficiency testing and other validation efforts aimed at improving assay performance across laboratories and can be used for standardized assessments of vaccine-elicited neutralizing antibodies.

Indexed as

Acquired Immunodeficiency SyndromeAcute DiseaseAIDS VaccinesAmino Acid SequenceCell LineCloning, MolecularGene Products, envGenes, envHIV-1HIV AntibodiesHumansMolecular Sequence DataNeutralization TestsVaccines, SyntheticAIDS VaccinesGene Products, envHIV AntibodiesVaccines, Synthetic

Identifiers

PMID16051804
PMCPMC1182643
OpenAlexW2146704167

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.