ArticleJournal of the American Medical Informatics Association : JAMIA
Generating a reliable reference standard set for syndromic case classification.
Article in Journal of the American Medical Informatics Association : JAMIA. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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18 citing papers in PubMed.
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- Machine learning for psychiatric patient triaging: an investigation of cascading classifiers.Journal of the American Medical Informatics Association : JAMIA · 2018Article
- Validation of Diagnostic Groups Based on Health Care Utilization Data Should Adjust for Sampling Strategy.Medical care · 2017Article
- Accuracy and generalizability of using automated methods for identifying adverse events from electronic health record data: a validation study protocol.BMC health services research · 2017Article
- Using chief complaints for syndromic surveillance: a review of chief complaint based classifiers in North America.Journal of biomedical informatics · 2013Review
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- Semantic annotation of clinical events for generating a problem list.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2013Article
- Building an automated SOAP classifier for emergency department reports.Journal of biomedical informatics · 2012Article
- A comparison of two methods for retrieving ICD-9-CM data: the effect of using an ontology-based method for handling terminology changes.Journal of biomedical informatics · 2011Article
- Accuracy of syndrome definitions based on diagnoses in physician claims.BMC public health · 2011Article
- Understanding Inter-rater Disagreement: A Mixed Methods Approach.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2010Article
- Combining free text and structured electronic medical record entries to detect acute respiratory infections.PloS one · 2010Article
- Biomedical informatics and translational medicine.Journal of translational medicine · 2010Review
- Multilingual chief complaint classification for syndromic surveillance: an experiment with Chinese chief complaints.International journal of medical informatics · 2009Article
- A comparison of two methods for retrieving ICD-9-CM data: The effect of using an ontology-based method for handling terminology changes.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2007Article
- Defining and applying a method for improving the sensitivity and specificity of an emergency department early event detection system.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2007Article
- Inductive creation of an annotation schema for manually indexing clinical conditions from emergency department reports.Journal of biomedical informatics · 2006Article
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Abstract
objectiveTo generate and measure the reliability for a reference standard set with representative cases from seven broad syndromic case definitions and several narrower syndromic definitions used for biosurveillance.
designFrom 527,228 eligible patients between 1990 and 2003, we generated a set of patients potentially positive for seven syndromes by classifying all eligible patients according to their ICD-9 primary discharge diagnoses. We selected a representative subset of the cases for chart review by physicians, who read emergency department reports and assigned values to 14 variables related to the seven syndromes. MEASUREMENTS: (1) Positive predictive value of the ICD-9 diagnoses; (2) prevalence of the syndromic definitions and related variables; (3) agreement between physician raters demonstrated by kappa, kappa corrected for bias and prevalence, and Finn's r; and (4) reliability of the reference standard classifications demonstrated by generalizability coefficients.
resultsPositive predictive value for ICD-9 classification ranged from 0.33 for botulinic to 0.86 for gastrointestinal. We generated between 80 and 566 positive cases for six of the seven syndromic definitions. Rash syndrome exhibited low prevalence (34 cases). Agreement between physician raters was high, with kappa > 0.70 for most variables. Ratings showed no bias. Finn's r was >0.70 for all variables. Generalizability coefficients were >0.70 for all variables but three.
conclusionOf the 27 syndromes generated by the 14 variables, 21 showed high enough prevalence, agreement, and reliability to be used as reference standard definitions against which an automated syndromic classifier could be compared. Syndromic definitions that showed poor agreement or low prevalence include febrile botulinic syndrome, febrile and nonfebrile rash syndrome, respiratory syndrome explained by a nonrespiratory or noninfectious diagnosis, and febrile and nonfebrile gastrointestinal syndrome explained by a nongastrointestinal or noninfectious diagnosis.
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