Evidence map›Paper›PMID 16044160›Full record

ArticleOncogene2005

Absence of mutation in the putative tumor-suppressor gene KLF6 in colorectal cancers.

Astrid Lièvre, Bruno Landi, Jean-François Côté, Nicolas Veyrie, Jessica Zucman-Rossi, Anne Berger, Pierre Laurent-Puig

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Oncogene, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Mutations and Krüppel-like factor 6 (KLF6) expression levels in breast cancer.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2014
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Functional role of the KLF6 tumour suppressor gene in gastric cancer.European journal of cancer (Oxford, England : 1990) · 2009
    Article
  13. Article
  14. Article
  15. Somatic mutations in cardiac malformations.Journal of medical genetics · 2006
    Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 1 country.

Astrid Lièvre1INSERM U490 Laboratoire de Toxicologie Moléculairei, Université René Descartes, 75006 Paris, France. pierre.laurent-puig@univ-paris5.fr
Bruno Landi
Jean-François Côté
Nicolas Veyrie
Jessica Zucman-Rossi
Anne Berger
Pierre Laurent-Puig
Hôpital Européen Georges-Pompidou · FRUniversité Paris Cité · FRAssistance Publique – Hôpitaux de Paris · FRGénomique Fonctionnelle des Tumeurs Solides · FRInserm · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The KLF6 gene encodes the Krüppel-like factor 6, a transcription factor that has been individualized as a tumor-suppressor gene involved in the regulation of cell proliferation and differentiation. Recently, high frequency (42%) of KLF6 mutations have been reported in colorectal cancers (CRC) as in prostate cancers, astrocytic gliomas and hepatocellular carcinomas. The aims of the study was to confirm the frequency of KLF6 mutations in a larger series of CRC than that previously published by using DNA extracted from frozen tissue samples, which have been proved to generate less mutational artefact than that extracted from formalin-fixed paraffin-embedded tissue samples, in order to compare KLF6 mutation frequency with that of other common genetic alterations and to determine genotype-phenotype correlations. Amplification and direct sequencing of KLF6 exon 2 of 76 CRC and matched normal frozen tissues was performed. Polymorphisms were observed in 14 cases, among which two (T35T and S116S) had not already been reported. No KLF6 somatic mutation was observed. Our data suggest a minor role of KLF6 mutation in colorectal carcinogenesis and underline the fact that the validity of sequence informations obtained from DNA extracted from formalin-fixed tissues may be limited.

Indexed as

Genes, Tumor SuppressorMutationAgedBiomarkers, TumorChromosomes, Human, Pair 10Colorectal NeoplasmsExonsFemaleGenetic VariationGerm-Line MutationHumansIntronsKruppel-Like Factor 6Kruppel-Like Transcription FactorsLoss of HeterozygosityMaleBiomarkers, TumorKLF6 protein, humanKruppel-Like Factor 6Kruppel-Like Transcription FactorsProto-Oncogene Proteins

Identifiers

PMID16044160
OpenAlexW2036298674

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.