Evidence map›Paper›PMID 16043481›Full record

ArticleThe Journal of biological chemistry2005

RPGR-ORF15, which is mutated in retinitis pigmentosa, associates with SMC1, SMC3, and microtubule transport proteins.

Hemant Khanna, Toby W Hurd, Concepcion Lillo, Xinhua Shu, Sunil K Parapuram, Shirley He, Masayuki Akimoto, Alan F Wright, Ben Margolis, David S Williams and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 84 papers.

0numbers the graph read from it
0cells of the map it votes in
84citing papers in PubMed
7.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

84 citing papers in PubMed, 170 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Cold Spring Harbor perspectives in medicine · 2023
    Review
  7. CiliaMiner: an integrated database for ciliopathy genes and ciliopathies.Database : the journal of biological databases and curation · 2023
    Article
  8. Article
  9. Retinal degeneration inFrontiers in cell and developmental biology · 2023
    Article
  10. Exon Skipping Through Chimeric AntisenseNucleic acid therapeutics · 2022
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Review

24 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Hemant KhannaDepartment of Ophthalmology & Visual Sciences, University of Michigan, Ann Arbor, Michigan 48105, USA.
Toby W Hurd
Concepcion Lillo
Xinhua Shu
Sunil K Parapuram
Shirley He
Masayuki Akimoto
Alan F Wright
Ben Margolis
David S Williams
Anand Swaroop
University of Michigan–Ann Arbor · USUniversity of California, San Diego · USWestern General Hospital · GBKyoto University Hospital · JP

Funding

VIVARIUM MODULEP30EY007003 · NEI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI David Antonetti · 1987 to 2026
$17.6M
X-LINKED RETINITIS PIGMENTOSAR01EY007961 · NEI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KHANNA, HEMANT · 1994 to 2009
$4.3M
The Photoreceptor CiliumR01EY013408 · NEI · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI WILLIAMS, DAVID S · 2001 to 2017
$3.8M
Core--ProteomicsP30EY012598 · NEI · SCRIPPS RESEARCH INSTITUTE · PI FRIEDLANDER, MARTIN · 2001 to 2005
$3.6M
Crumbs3 in epithelial polarity and ciliogenesisR01DK069605 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MARGOLIS, BENJAMIN L · 2005 to 2013
$2.9M
E75 IN THE DEVELOPING DROSOPHILA EYEF31EY007003 · NEI · YALE UNIVERSITY · PI SHILTON, ALYCIA N · 1999 to 2001
$14k
X-LINKED OCULAR ALBINISM &RETINITIS PIGMENTOSAR29EY007961 · NEI · YALE UNIVERSITY · PI SWAROOP, ANAND · 1989 to 1993
–
NEI NIH HHS EY07003NEI NIH HHS EY07961NEI NIH HHS EY12598NEI NIH HHS EY13408NEI NIH HHS F31 EY007003NEI NIH HHS P30 EY007003NEI NIH HHS P30 EY012598NEI NIH HHS R01 EY007961NEI NIH HHS R01 EY013408NIDDK NIH HHS DK069605NIDDK NIH HHS R01 DK069605
6 · The paper itself

Abstract

Mutations in the retinitis pigmentosa GTPase regulator (RPGR) gene account for almost 20% of patients with retinitis pigmentosa. Most mutations are detected in alternatively spliced RPGR-ORF15 isoform(s), which are primarily but not exclusively expressed in the retina. We show that, in addition to the axoneme, the RPGR-ORF15 protein is localized to the basal bodies of photoreceptor connecting cilium and to the tip and axoneme of sperm flagella. Mass spectrometric analysis of proteins that were immunoprecipitated from the retinal axoneme-enriched fraction using an anti-ORF15 antibody identified two chromosome-associated proteins, structural maintenance of chromosomes (SMC) 1 and SMC3. Using pulldown assays, we demonstrate that the interaction of RPGR with SMC1 and SMC3 is mediated, at least in part, by the RCC1-like domain of RPGR. This interaction was not observed with phosphorylation-deficient mutants of SMC1. Both SMC1 and SMC3 localized to the cilia of retinal photoreceptors and Madin-Darby canine kidney cells, suggesting a broader physiological relevance of this interaction. Additional immunoprecipitation studies revealed the association of RPGR-ORF15 isoform(s) with the intraflagellar transport polypeptide IFT88 as well as microtubule motor proteins, including KIF3A, p150Glued, and p50-dynamitin. Inhibition of dynein function by overexpressing p50 abrogated the localization of RPGR-ORF15 to basal bodies. Taken together, these results provide novel evidence for the possible involvement of RPGR-ORF15 in microtubule organization and regulation of transport in primary cilia.

Indexed as

AnimalsCarrier ProteinsCell Cycle ProteinsChondroitin Sulfate ProteoglycansChromosomal Proteins, Non-HistoneEye ProteinsHumansMiceMice, KnockoutMicrotubulesMutationOpen Reading FramesRetinitis PigmentosaStructural Maintenance of Chromosome Protein 1Carrier ProteinsCell Cycle ProteinsChondroitin Sulfate ProteoglycansChromosomal Proteins, Non-HistoneEye ProteinsRPGR protein, humanSMC3 protein, humanStructural Maintenance of Chromosome Protein 1

Identifiers

PMID16043481
PMCPMC1249479
OpenAlexW2127769936

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.