Evidence map›Paper›PMID 16041003›Full record

ArticleInfection and immunity2005

Comparison of Helicobacter pylori virulence gene expression in vitro and in the Rhesus macaque.

Jenni K Boonjakuakul, Don R Canfield, Jay V Solnick

Open access · greenAbstract readComparative Study
In one paragraph

Article in Infection and immunity, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 54 citations in OpenAlex.

  1. Hesperetin Inhibits Expression of Virulence Factors and Growth ofInternational journal of molecular sciences · 2021
    Article
  2. Evodiamine InhibitsInternational journal of molecular sciences · 2021
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  3. Contribution of Heptose Metabolites and theFrontiers in immunology · 2021
    Article
  4. Precancerous Gastric Lesions withBioMed research international · 2020
    Article
  5. TheScientificWorldJournal · 2020
    Review
  6. Inhibitory Effects of Menadione onInternational journal of molecular sciences · 2019
    Article
  7. Role of Proline in Pathogen and Host Interactions.Antioxidants & redox signaling · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Jenni K BoonjakuakulDepartment of Medicine, Division of Infectious Disease, 513 Parnassus Avenue, HSE 418/Box 0654, University of California, San Francisco, San Francisco, CA 94143, USA. jennib@medicine.ucsf.edu
Don R Canfield
Jay V Solnick
Oregon National Primate Research Center · USUniversity of California, Davis · US

Funding

Gene expression during H. pylori-host interactionsR01AI042081 · NIAID · UNIVERSITY OF CALIFORNIA DAVIS · PI SOLNICK, JAY V. · 1998 to 2007
$2.5M
Transmission of H. pylori infection in the rhesus monkeyR01RR014298 · NCRR · UNIVERSITY OF CALIFORNIA DAVIS · PI SOLNICK, JAY V. · 2001 to 2005
$1.8M
Transcription of H. pylori Genes in the Rhesus MonkeyR21RR015293 · NCRR · UNIVERSITY OF CALIFORNIA DAVIS · PI SOLNICK, JAY V. · 2001 to 2002
$292k
NCRR NIH HHS R01 RR014298NCRR NIH HHS RR14298NCRR NIH HHS RR15293NIAID NIH HHS AI42081NIAID NIH HHS R01 AI042081
6 · The paper itself

Abstract

We used a quantitative real-time reverse transcriptase PCR assay to measure the transcript abundance of 46 known and putative Helicobacter pylori virulence genes, including 24 genes on the Cag pathogenicity island. The expression profile of H. pylori cells grown in vitro was also compared to expression in vivo after experimental infection of rhesus macaques. Transcript abundance in vitro (mid-log phase) ranged from about 0.004 (feoB and hpaA) to 20 (ureAB, napA, and cag25) copies/cell. Expression of most genes was repressed during the transition from logarithmic- to stationary-phase growth, but several well-characterized H. pylori virulence genes (katA, napA, vacA, and cagA) were induced. Comparison of results in the rhesus macaque with similar data from humans showed a strong correlation (r = 0.89). The relative in vivo expression in the rhesus monkey was highly correlated with in vitro expression during mid-log (r = 0.89)- and stationary (r = 0.88)-phase growth. Transcript abundance was on average three- to fourfold reduced in vivo compared to in vitro during mid-log phase. However, when compared to stationary phase, increased expression in vivo was observed for 6 of 7 genes on a contiguous portion of the pathogenicity island, several of which are thought to encode the H. pylori type IV structural pilus and its accessory proteins. These results suggest the possibility that some genes encoding the H. pylori type IV structural pilus and accessory proteins may form an operon that is induced during growth in vivo.

Indexed as

AnimalsDNA PrimersGene ExpressionGene Expression ProfilingGene Expression Regulation, BacterialHelicobacter pyloriHumansIn Vitro TechniquesMacaca mulattaPolymerase Chain ReactionTime FactorsVirulenceDNA Primers

Identifiers

PMID16041003
PMCPMC1201232
OpenAlexW2159281543

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.