Evidence map›Paper›PMID 16040756›Full record

ArticleBiophysical journal2005

Quantitative modeling of chloride conductance in yeast TRK potassium transporters.

Alberto Rivetta, Clifford Slayman, Teruo Kuroda

Open access · bronzeAbstract readComparative StudyEvaluation Study
In one paragraph

Article in Biophysical journal, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.7field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Alberto RivettaDepartment of Cellular and Molecular Physiology, Yale School of Medicine, New Haven, CT, USA.
Clifford Slayman
Teruo Kuroda
Yale University · USOkayama University · JP

Funding

STRUCTURE AND FUNCTION OF K+ CARRIER-CHANNELS IN YEASTR01GM060696 · NIGMS · YALE UNIVERSITY · PI SLAYMAN, CLIFFORD L · 2000 to 2003
$936k
NIGMS NIH HHS GM-60696NIGMS NIH HHS R01 GM060696
6 · The paper itself

Abstract

So-called TRK proteins are responsible for active accumulation of potassium in plants, fungi, and bacteria. A pair of these proteins in the plasma membrane of Saccharomyces cerevisiae, ScTrk1p and ScTrk2p, also admit large, adventitious, chloride currents during patch-recording (Cl- efflux). Resulting steady-state current-voltage curves can be described by two simple kinetic models, most interestingly, voltage-driven channeling of ions through a pair of activation-energy barriers that lie within the membrane dielectric, near the inner (alpha) and outer (beta) surfaces. Two barrier heights (E(alpha) and E(beta)) and two relative distances (a1 and b2) from the surfaces specify the model. Measured current amplitude parallels intracellular chloride concentration and is strongly enhanced by acidic extracellular pH. The former implies an exponential variation of a1, between approximately 0.2 and approximately 0.4 of the membrane thickness, whereas the latter implies a linear variation of E(beta), by 0.69 Kcal mol(-1)/pH. The model requires membrane slope conductance to rise exponentially with increasingly large negative membrane voltage, as verified by data from a few yeast spheroplasts that tolerated voltage clamping at -200 to -300 mV. The behaviors of E(beta) and a1 accord qualitatively with a hypothetical structural model for fungal TRK proteins, suggesting that chloride ions flow through a central pore formed by symmetric aggregation of four TRK monomers.

Indexed as

Models, BiologicalCation Transport ProteinsCell MembraneChlorineComputer SimulationElectric ConductivityHydrogen-Ion ConcentrationIon Channel GatingMembrane PotentialsModels, ChemicalSaccharomyces cerevisiae ProteinsCation Transport ProteinsChlorineSaccharomyces cerevisiae ProteinsTRK1 protein, S cerevisiaeTRK2 protein, S cerevisiae

Identifiers

PMID16040756
PMCPMC1366741
OpenAlexW1997905524

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.