ArticleAnnals of botany2005
The use of microarrays to study the anaerobic response in Arabidopsis.
Article in Annals of botany, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed.
- Translational insights into abiotic interactions: From Arabidopsis to crop plants.The Plant cell · 2025Review
- Transcriptome responses of an ungrafted Phytophthora root rot tolerant avocado (Persea americana) rootstock to flooding and Phytophthora cinnamomi.BMC plant biology · 2016Article
- Unsaturation of very-long-chain ceramides protects plant from hypoxia-induced damages by modulating ethylene signaling in Arabidopsis.PLoS genetics · 2015Article
- Contrasting Changes Caused by Drought and Submergence Stresses in Bermudagrass (Cynodon dactylon).Frontiers in plant science · 2015Article
- The Transcriptome of Brassica napus L. Roots under Waterlogging at the Seedling Stage.International journal of molecular sciences · 2013Article
- Expression and promoter analysis of six heat stress-inducible genes in rice.TheScientificWorldJournal · 2013Article
- Hypoxia and hydrogen cyanamide induce bud-break and up-regulate hypoxic responsive genes (HRG) and VvFT in grapevine-buds.Plant molecular biology · 2012Article
- Expression profile in rice panicle: insights into heat response mechanism at reproductive stage.PloS one · 2012Article
- The AP2/ERF transcription factor AtERF73/HRE1 modulates ethylene responses during hypoxia in Arabidopsis.Plant physiology · 2011Article
- Insights into hypoxic systemic responses based on analyses of transcriptional regulation in Arabidopsis.PloS one · 2011Article
- Transcript and metabolite profiling of the adaptive response to mild decreases in oxygen concentration in the roots of arabidopsis plants.Annals of botany · 2009Article
- Submergence-responsive MicroRNAs are potentially involved in the regulation of morphological and metabolic adaptations in maize root cells.Annals of botany · 2008Article
- Core genome responses involved in acclimation to high temperature.Plant physiology · 2008Article
- Transcript profiling of the anoxic rice coleoptile.Plant physiology · 2007Article
- DRASTIC--INSIGHTS: querying information in a plant gene expression database.Nucleic acids research · 2006Article
- Response and adaptation by plants to flooding stress.Annals of botany · 2005Article
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
BACKGROUND AND
aimsThe use of microarrays to characterize the transcript profile of Arabidopsis under various experimental conditions is rapidly expanding. This technique provides a huge amount of expression data, requiring bioinformatics tools to allow the proposal of working hypotheses. The aim of this study was to test the usefulness of this approach to examine the anaerobic response of Arabidopsis by evaluating the reliability of microarray data sets and by interrogation of microarray databases for the expression data of a set of anoxia-inducible genes.
methodsUser-driven software tools that display large gene expression datasets onto diagrams of metabolic pathways were used. The Genevestigator software was used to explore the expression of anoxia-inducible genes throughout the life cycle of Arabidopsis as well as relative to plant organs. T-DNA tagged mutants for selected genes identified from our microarray analysis were searched in the Arabidopsis thaliana Insertion Database, looking for insertional mutants from the Salk collection. KEY
resultsThe results indicate that microarray data can provide the basis for new hypotheses in the field of plant responses to anaerobiosis and also provide knowledge for a targeted screening of Arabidopsis mutants.
conclusionsResearch on plant responses to anaerobiosis can enormously benefit from the microarray technology.
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