Evidence map›Paper›PMID 16030240›Full record

ArticleJournal of bacteriology2005

Effective symbiosis between Rhizobium etli and Phaseolus vulgaris requires the alarmone ppGpp.

Martine Moris, Kristien Braeken, Eric Schoeters, Christel Verreth, Serge Beullens, Jos Vanderleyden, Jan Michiels

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
5.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 62 citations in OpenAlex.

  1. Coupling of cell growth modulation to asymmetric division and cell cycle regulation inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  2. Article
  3. Review
  4. Review
  5. Article
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  7. Transcriptome Analysis ofInternational journal of molecular sciences · 2018
    Article
  8. Review
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. tRNAs as antibiotic targets.International journal of molecular sciences · 2014
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. ppGpp conjures bacterial virulence.Microbiology and molecular biology reviews : MMBR · 2010
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Martine MorisCentre of Microbial and Plant Genetics, Katholieke Universiteit Leuven, Kasteelpark Arenberg 20, B-3001 Heverlee, Belgium.
Kristien Braeken
Eric Schoeters
Christel Verreth
Serge Beullens
Jos Vanderleyden
Jan Michiels
KU Leuven · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The symbiotic interaction between Rhizobium etli and Phaseolus vulgaris, the common bean plant, ultimately results in the formation of nitrogen-fixing nodules. Many aspects of the intermediate and late stages of this interaction are still poorly understood. The R. etli relA gene was identified through a genome-wide screening for R. etli symbiotic mutants. RelA has a pivotal role in cellular physiology, as it catalyzes the synthesis of (p)ppGpp, which mediates the stringent response in bacteria. The synthesis of ppGpp was abolished in an R. etli relA mutant strain under conditions of amino acid starvation. Plants nodulated by an R. etli relA mutant had a strongly reduced nitrogen fixation activity (75% reduction). Also, at the microscopic level, bacteroid morphology was altered, with the size of relA mutant bacteroids being increased compared to that of wild-type bacteroids. The expression of the sigma(N)-dependent nitrogen fixation genes rpoN2 and iscN was considerably reduced in the relA mutant. In addition, the expression of the relA gene was negatively regulated by RpoN2, the symbiosis-specific sigma(N) copy of R. etli. Therefore, an autoregulatory loop controlling the expression of relA and rpoN2 seems operative in bacteroids. The production of long- and short-chain acyl-homoserine-lactones by the cinIR and raiIR systems was decreased in an R. etli relA mutant. Our results suggest that relA may play an important role in the regulation of gene expression in R. etli bacteroids and in the adaptation of bacteroid physiology.

Indexed as

Adaptation, PhysiologicalDNA-Binding ProteinsDNA-Directed RNA PolymerasesGene Expression Regulation, BacterialGenes, BacterialGuanosine TetraphosphateLigasesMolecular Sequence DataNitrogen FixationPhaseolusRhizobium etliRNA Polymerase Sigma 54Sigma FactorSymbiosisDNA-Binding ProteinsDNA-Directed RNA Polymerasesguanosine 3',5'-polyphosphate synthetasesGuanosine TetraphosphateLigasesRNA Polymerase Sigma 54Sigma Factor

Identifiers

PMID16030240
PMCPMC1196010
OpenAlexW2145915427

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.