Evidence map›Paper›PMID 16030220›Full record

ArticleJournal of bacteriology2005

Identification of an Escherichia coli operon required for formation of the O-antigen capsule.

Adi Peleg, Yulia Shifrin, Ophir Ilan, Chen Nadler-Yona, Shani Nov, Simi Koby, Kobi Baruch, Shoshy Altuvia, Maya Elgrably-Weiss, Cecilia M Abe and 3 more

Open access · greenAbstract readComparative Study
In one paragraph

Article in Journal of bacteriology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 96 citations in OpenAlex.

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  8. O26 Polysaccharides as Key Players in EnteropathogenicInternational journal of molecular sciences · 2024
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  12. Surviving Serum: the Escherichia coliInfection and immunity · 2021
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  13. Gram-negative outer-membrane proteins with multiple β-barrel domains.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  14. Comparative Pathogenomics ofInfection and immunity · 2021
    Article
  15. Article
  16. Article
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  18. TheThe Biochemical journal · 2019
    Review
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 3 countries.

Adi PelegDepartment of Molecular Genetics and Biotechnology, Faculty of Medicine, The Hebrew University, POB 12272, Jerusalem 91120, Israel.
Yulia Shifrin
Ophir Ilan
Chen Nadler-Yona
Shani Nov
Simi Koby
Kobi Baruch
Shoshy Altuvia
Maya Elgrably-Weiss
Cecilia M Abe
Stuart Knutton
Mark A Saper
Ilan Rosenshine
Hebrew University of Jerusalem · ILUniversity of Birmingham · GBUniversity of Michigan–Ann Arbor · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Escherichia coli produces polysaccharide capsules that, based on their mechanisms of synthesis and assembly, have been classified into four groups. The group 4 capsule (G4C) polysaccharide is frequently identical to that of the cognate lipopolysaccharide O side chain and has, therefore, also been termed the O-antigen capsule. The genes involved in the assembly of the group 1, 2, and 3 capsules have been described, but those required for G4C assembly remained obscure. We found that enteropathogenic E. coli (EPEC) produces G4C, and we identified an operon containing seven genes, ymcD, ymcC, ymcB, ymcA, yccZ, etp, and etk, which are required for formation of the capsule. The encoded proteins appear to constitute a polysaccharide secretion system. The G4C operon is absent from the genomes of enteroaggregative E. coli and uropathogenic E. coli. E. coli K-12 contains the G4C operon but does not express it, because of the presence of IS1 at its promoter region. In contrast, EPEC, enterohemorrhagic E. coli, and Shigella species possess an intact G4C operon.

Indexed as

Genes, BacterialOperonBacterial CapsulesBacterial ProteinsEscherichia coliEscherichia coli ProteinsMembrane ProteinsMutationO AntigensProtein-Tyrosine KinasesBacterial ProteinsEscherichia coli ProteinsEtk protein, E coliMembrane ProteinsO AntigensProtein-Tyrosine Kinases

Identifiers

PMID16030220
PMCPMC1196049
OpenAlexW2108376182

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.