Evidence map›Paper›PMID 16027974›Full record

ArticlePlant molecular biology2005

Stress-induced co-expression of alternative respiratory chain components in Arabidopsis thaliana.

Rachel Clifton, Ryan Lister, Karen L Parker, Pia G Sappl, Dina Elhafez, A Harvey Millar, David A Day, James Whelan

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Plant molecular biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 119 papers.

0numbers the graph read from it
0cells of the map it votes in
119citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

119 citing papers in PubMed, 336 citations in OpenAlex.

  1. Article
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  4. Genome-wide identification ofFrontiers in plant science · 2026
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  6. Review
  7. Uracil-DNA Glycosylase fromInternational journal of molecular sciences · 2025
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  9. Genome-Wide Identification and Characterization ofPlants (Basel, Switzerland) · 2024
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article

59 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Rachel CliftonPlant Molecular Biology Group, School of Biomedical and Chemical Sciences, The University of Western Australia, Crawley, Western Australia, Australia.
Ryan Lister
Karen L Parker
Pia G Sappl
Dina Elhafez
A Harvey Millar
David A Day
James Whelan
University of Western Australia · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant mitochondria contain non-phosphorylating bypasses of the respiratory chain, catalysed by the alternative oxidase (AOX) and alternative NADH dehydrogenases (NDH), as well as uncoupling (UCP) protein. Each of these components either circumvents or short-circuits proton translocation pathways, and each is encoded by a small gene family in Arabidopsis. Whole genome microarray experiments were performed with suspension cell cultures to examine the effects of various 3 h treatments designed to induce abiotic stress. The expression of over 60 genes encoding components of the classical, phosphorylating respiratory chain and tricarboxylic acid cycle remained largely constant when cells were subjected to a broad range of abiotic stresses, but expression of the alternative components responded differentially to the various treatments. In detailed time-course quantitative PCR analysis, specific members of both AOX and NDH gene families displayed coordinated responses to treatments. In particular, the co-expression of AOX1a and NDB2 observed under a number of treatments suggested co-regulation that may be directed by common sequence elements arranged hierarchically in the upstream promoter regions of these genes. A series of treatment sets were identified, representing the response of specific AOX and NDH genes to mitochondrial inhibition, plastid inhibition and abiotic stresses. These treatment sets emphasise the multiplicity of pathways affecting alternative electron transport components in plants.

Indexed as

Alternative OxidaseAnaerobiosisArabidopsisArabidopsis ProteinsCarrier ProteinsCell Culture TechniquesCluster AnalysisElectron TransportGene Expression ProfilingGene Expression Regulation, PlantIon ChannelsMembrane ProteinsMitochondrial ProteinsNADH DehydrogenaseOligonucleotide Array Sequence AnalysisOxidoreductasesAlternative OxidaseArabidopsis ProteinsCarrier ProteinsIon ChannelsMembrane ProteinsMitochondrial ProteinsNADH DehydrogenaseOxidoreductasesPlant ProteinsUncoupling Protein 1Xenobiotics

Identifiers

PMID16027974
OpenAlexW2021518775

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.