Evidence map›Paper›PMID 16025304›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2005

Genomic analysis of Grapevine Retrotransposon 1 (Gret 1) in Vitis vinifera.

H Sofia Pereira, Augusta Barão, Margarida Delgado, Leonor Morais-Cecílio, Wanda Viegas

Abstract read
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In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Structural Characterization ofG3 (Bethesda, Md.) · 2019
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Involvement of disperse repetitive sequences in wheat/rye genome adjustment.International journal of molecular sciences · 2012
    Article
  12. iPBS: a universal method for DNA fingerprinting and retrotransposon isolation.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2010
    Article
  13. Genome merger: from sequence rearrangements in triticale to their elimination in wheat-rye addition lines.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2010
    Article
  14. Genomic amplification of the Gret1 retroelement in white-fruited accessions of wild vitis and interspecific hybrids.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2008
    Article
  15. Article
  16. Article
  17. Wine grape (Vitis vinifera L.) color associates with allelic variation in the domestication gene VvmybA1.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2007
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

H Sofia PereiraSecção de Genética, Instituto Superior de Agronomia, Centro de Botânica Aplicada à Agricultura, Tapada da Ajuda, 1349-017 Lisboa, Portugal. sofiapereira@isa.utl.pt
Augusta Barão
Margarida Delgado
Leonor Morais-Cecílio
Wanda Viegas

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The complete sequence of the first retrotransposon isolated in Vitis vinifera, Gret 1, was used to design primers that permitted its analysis in the genome of grapevine cultivars. This retroelement was found to be dispersed throughout the genome with sites of repeated insertions. Fluorescent in situ hybridization indicated multiple Gret 1 loci distributed throughout euchromatic portions of chromosomes. REMAP and IRAP proved to be useful as molecular markers in grapevine. Both of these techniques showed polymorphisms between cultivars but not between clones of the same cultivar, indicating differences in Gret 1 distribution between cultivars. The combined cytological and molecular results suggest that Gret 1 may have a role in gene regulation and in explaining the enormous phenotypic variability that exists between cultivars.

Indexed as

Genome, PlantRetroelementsBase SequenceChromosome MappingDNA PrimersIn Situ Hybridization, FluorescenceInterphaseMetaphasePlant RootsRestriction MappingVitisDNA PrimersRetroelements

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.