Evidence map›Paper›PMID 16025134›Full record

ArticleEMBO reports2005

The structure of the TRAPP subunit TPC6 suggests a model for a TRAPP subcomplex.

Daniel Kümmel, Jürgen J Müller, Yvette Roske, Rolf Misselwitz, Konrad Büssow, Udo Heinemann

Abstract read
In one paragraph

Article in EMBO reports, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Expression and prognostic potential of TMEM204: a pan-cancer analysis.International journal of clinical and experimental pathology · 2022
    Article
  7. Article
  8. Article
  9. Further Delineation of theJournal of pediatric genetics · 2019
    Article
  10. Article
  11. TRAPP Complexes in Secretion and Autophagy.Frontiers in cell and developmental biology · 2016
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Structure and mechanism in membrane trafficking.Current opinion in cell biology · 2010
    Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Daniel KümmelMax-Delbrück Center for Molecular Medicine, Berlin, Germany.
Jürgen J Müller
Yvette Roske
Rolf Misselwitz
Konrad Büssow
Udo Heinemann
Max Delbrück Center · DEFreie Universität Berlin · DEMax Planck Institute for Molecular Genetics · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The TRAPP (transport protein particle) complexes are tethering complexes that have an important role at the different steps of vesicle transport. Recently, the crystal structures of the TRAPP subunits SEDL and BET3 have been determined, and we present here the 1.7 Angstroms crystal structure of human TPC6, a third TRAPP subunit. The protein adopts an alpha/beta-plait topology and forms a dimer. In spite of low sequence similarity, the structure of TPC6 strikingly resembles that of BET3. The similarity is especially prominent at the dimerization interfaces of the proteins. This suggests heterodimerization of TPC6 and BET3, which is shown by in vitro and in vivo association studies. Together with TPC5, another TRAPP subunit, TPC6 and BET3 are supposed to constitute a family of paralogous proteins with closely similar three-dimensional structures but little sequence similarity among its members.

Indexed as

Amino Acid SequenceBlotting, WesternCircular DichroismCrystallography, X-RayDimerizationDNA, ComplementaryGolgi ApparatusHumansMembrane ProteinsModels, MolecularMolecular Sequence DataMultigene FamilyProtein BindingProtein ConformationProtein FoldingProtein Structure, SecondaryDNA, ComplementaryMembrane ProteinsRecombinant Proteinstransport protein particle, TRAPPTRAPPC3 protein, humanTRAPPC5 protein, humanTRAPPC6B protein, humanVesicular Transport Proteins

Identifiers

PMID16025134
PMCPMC1369139
OpenAlexW2149702013

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.