ArticlePlant molecular biology2005
Genome-wide expression profiling and identification of gene activities during early flower development in Arabidopsis.
Article in Plant molecular biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
30 citing papers in PubMed, 71 citations in OpenAlex.
- Developmentally dependent reprogramming of the Arabidopsis floral transcriptome under sufficient and limited water availability.BMC plant biology · 2024Article
- The Quest for Molecular Regulation Underlying Unisexual Flower Development.Frontiers in plant science · 2016Review
- Next-generation transcriptome analysis in transgenic birch overexpressing and suppressing APETALA1 sheds lights in reproduction development and diterpenoid biosynthesis.Plant cell reports · 2015Article
- Estimating the proportion of true null hypotheses when the statistics are discrete.Bioinformatics (Oxford, England) · 2015Article
- Patterns of gene expression during Arabidopsis flower development from the time of initiation to maturation.BMC genomics · 2015Article
- Identification of tapetum-specific genes by comparing global gene expression of four different male sterile lines in Brassica oleracea.Plant molecular biology · 2015Article
- Functional characterization of drought-responsive modules and genes in Oryza sativa: a network-based approach.Frontiers in genetics · 2015Article
- Genetics of dioecy and causal sex chromosomes in plants.Journal of genetics · 2014Review
- Article
- Analysis of Arabidopsis floral transcriptome: detection of new florally expressed genes and expansion of Brassicaceae-specific gene families.Frontiers in plant science · 2014Article
- On the role of AtDMC1, AtRAD51 and its paralogs during Arabidopsis meiosis.Frontiers in plant science · 2014Review
- Alternative splicing during Arabidopsis flower development results in constitutive and stage-regulated isoforms.Frontiers in genetics · 2014Article
- Developmental genetics of the perianthless flowers and bracts of a paleoherb species, Saururus chinensis.PloS one · 2013Article
- Expression dynamics of metabolic and regulatory components across stages of panicle and seed development in indica rice.Functional & integrative genomics · 2012Article
- AMS-dependent and independent regulation of anther transcriptome and comparison with those affected by other Arabidopsis anther genes.BMC plant biology · 2012Article
- Article
- Transcription profiling of fertilization and early seed development events in a solanaceous species using a 7.7 K cDNA microarray from Solanum chacoense ovules.BMC plant biology · 2010Article
- Identification of candidate genes for grain number in rice (Oryza sativa L.).Functional & integrative genomics · 2010Article
- Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies.Genome biology · 2010Article
- Comparison of next generation sequencing technologies for transcriptome characterization.BMC genomics · 2009Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We have used oligonucleotide microarrays to detect Arabidopsis gene expression during early flower development. Among the 22,746 genes represented on the Affymetrix ATH1 chip, approximately 14,660 (approximately 64.5%) genes were expressed with signal intensity at or more than 50 in each of the six organs/structures examined, including young inflorescences (floral stages 1-9), stage-12 floral buds, developing siliques, leaves, stems, and roots. 17,583 genes were expressed with an intensity at or above 50 in at least one tissue, including 12,245 genes that were expressed in all the six tissues. Comparison of genes expressed between young inflorescence or stage-12 floral buds with other tissues suggests that relatively large numbers of genes are expressed at similar levels in tissues that are related morphologically and/or developmentally, as supported by a cluster analysis with data from two other studies. Further analysis of the genes preferentially expressed in floral tissues has uncovered new genes potentially involved in Arabidopsis flower development. One hundred and four genes were determined to be preferentially expressed in young inflorescences, including 22 genes encoding putative transcription factors. We also identified 105 genes that were preferentially expressed in three reproductive structures (the young inflorescences, stage-12 floral buds and developing siliques), when compared with the vegetative tissues. RT-PCR results of selected genes are consistent with the results from these microarrays and suggest that the relative signal intensities detected with the Affymetrix microarray are reliable estimates of gene expression.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.