ArticlePlant molecular biology2005
Expressed sequence tags from the Yukon ecotype of Thellungiella reveal that gene expression in response to cold, drought and salinity shows little overlap.
Article in Plant molecular biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.
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43 citing papers in PubMed, 129 citations in OpenAlex.
- Adaptative Mechanisms of HalophyticFrontiers in plant science · 2022Review
- Genomic Variation Landscape of the Model Salt CressFrontiers in plant science · 2021Article
- Modulation of Energy Metabolism Is Important for Low-Oxygen Stress Adaptation in Brassicaceae Species.International journal of molecular sciences · 2020Article
- Methods for graftingPlant methods · 2019Article
- Halophytism: What Have We Learnt FromPlant physiology · 2018Review
- Molecular characterization of Brassica napus stress related transcription factors, BnMYB44 and BnVIP1, selected based on comparative analysis of Arabidopsis thaliana and Eutrema salsugineum transcriptomes.Molecular biology reports · 2018Article
- Plastid terminal oxidase requires translocation to the grana stacks to act as a sink for electron transport.Proceedings of the National Academy of Sciences of the United States of America · 2018Article
- Mitochondrial Biogenesis in Diverse Cauliflower Cultivars under Mild and Severe Drought. Impaired Coordination of Selected Transcript and Proteomic Responses, and Regulation of Various Multifunctional Proteins.International journal of molecular sciences · 2018Article
- Dark period transcriptomic and metabolic profiling of two diversePlant direct · 2018Article
- Lipid remodelling: Unravelling the response to cold stress in Arabidopsis and its extremophile relative Eutrema salsugineum.Plant science : an international journal of experimental plant biology · 2017Review
- Differential Mechanisms of Photosynthetic Acclimation to Light and Low Temperature in Arabidopsis and the Extremophile Eutrema salsugineum.Plants (Basel, Switzerland) · 2017Article
- Generation, Annotation, and Analysis of a Large-Scale Expressed Sequence Tag Library fromFrontiers in plant science · 2017Article
- Transcriptional Responses of Chilean Quinoa (Frontiers in plant science · 2017Article
- Salt Induces Features of a Dormancy-Like State in Seeds of Eutrema (Thellungiella) salsugineum, a Halophytic Relative of Arabidopsis.Frontiers in plant science · 2016Article
- High-throughput deep sequencing reveals that microRNAs play important roles in salt tolerance of euhalophyte Salicornia europaea.BMC plant biology · 2015Article
- Genome-wide identification of Thellungiella salsuginea microRNAs with putative roles in the salt stress response.BMC plant biology · 2013Article
- Transcriptome sequencing and microarray design for functional genomics in the extremophile Arabidopsis relative Thellungiella salsuginea (Eutrema salsugineum).BMC genomics · 2013Article
- Comparative proteomics of Thellungiella halophila leaves from plants subjected to salinity reveals the importance of chloroplastic starch and soluble sugars in halophyte salt tolerance.Molecular & cellular proteomics : MCP · 2013Article
- Growth platform-dependent and -independent phenotypic and metabolic responses of Arabidopsis and its halophytic relative, Eutrema salsugineum, to salt stress.Plant physiology · 2013Article
- Metabolomics as a tool to investigate abiotic stress tolerance in plants.International journal of molecular sciences · 2013Article
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Authors and funding
10 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Thellungiella salsuginea (also known as T. halophila) is a close relative of Arabidopsis that is very tolerant of drought, freezing, and salinity and may be an appropriate model to identify the molecular mechanisms underlying abiotic stress tolerance in plants. We produced 6578 ESTs, which represented 3628 unique genes (unigenes), from cDNA libraries of cold-, drought-, and salinity-stressed plants from the Yukon ecotype of Thellungiella. Among the unigenes, 94.1% encoded products that were most similar in amino acid sequence to Arabidopsis and 1.5% had no match with a member of the family Brassicaceae. Unigenes from the cold library were more similar to Arabidopsis sequences than either drought- or salinity-induced sequences, indicating that latter responses may be more divergent between Thellungiella and Arabidopsis. Analysis of gene ontology using the best matched Arabidopsis locus showed that the Thellungiella unigenes represented all biological processes and all cellular components, with the highest number of sequences attributed to the chloroplast and mitochondria. Only 140 of the unigenes were found in all three abiotic stress cDNA libraries. Of these common unigenes, 70% have no known function, which demonstrates that Thellungiella can be a rich resource of genetic information about environmental responses. Some of the ESTs in this collection have low sequence similarity with those in Genbank suggesting that they may encode functions that may contribute to Thellungiella's high degree of stress tolerance when compared with Arabidopsis. Moreover, Thellungiella is a closer relative of agriculturally important Brassica spp. than Arabidopsis, which may prove valuable in transferring information to crop improvement programs.
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