Evidence map›Paper›PMID 16020728›Full record

ArticleScience (New York, N.Y.)2005

The genome of the kinetoplastid parasite, Leishmania major.

Alasdair C Ivens, Christopher S Peacock, Elizabeth A Worthey, Lee Murphy, Gautam Aggarwal, Matthew Berriman, Ellen Sisk, Marie-Adele Rajandream, Ellen Adlem, Rita Aert and 91 more

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 662 papers.

0numbers the graph read from it
0cells of the map it votes in
662citing papers in PubMed
117.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

662 citing papers in PubMed, 1,359 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Resequencing and De Novo Assembly ofPathogens (Basel, Switzerland) · 2026
    Article
  7. Article
  8. Microbiology spectrum · 2026
    Article
  9. microPublication biology · 2026
    Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. CRISPR-Cas13b mediated gene knockdowns in Leishmania infantum.International journal for parasitology. Drugs and drug resistance · 2025
    Article
  15. Leishmaniasis.Nature reviews. Disease primers · 2025
    Review
  16. Article
  17. Article
  18. Unraveling the Genome Diversity ofLife (Basel, Switzerland) · 2025
    Review
  19. Article
  20. Review

602 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

101 authors at 3 institutions in 4 countries.

Alasdair C IvensWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SA, UK. alicat@sanger.ac.uk
Christopher S Peacock
Elizabeth A Worthey
Lee Murphy
Gautam Aggarwal
Matthew Berriman
Ellen Sisk
Marie-Adele Rajandream
Ellen Adlem
Rita Aert
Atashi Anupama
Zina Apostolou
Philip Attipoe
Nathalie Bason
Christopher Bauser
Alfred Beck
Stephen M Beverley
Gabriella Bianchettin
Katja Borzym
Gordana Bothe
Carlo V Bruschi
Matt Collins
Eithon Cadag
Laura Ciarloni
Christine Clayton
Richard M R Coulson
Ann Cronin
Angela K Cruz
Robert M Davies
Javier De Gaudenzi
Deborah E Dobson
Andreas Duesterhoeft
Gholam Fazelina
Nigel Fosker
Alberto Carlos Frasch
Audrey Fraser
Monika Fuchs
Claudia Gabel
Arlette Goble
André Goffeau
David Harris
Christiane Hertz-Fowler
Helmut Hilbert
David Horn
Yiting Huang
Sven Klages
Andrew Knights
Michael Kube
Natasha Larke
Lyudmila Litvin
Angela Lord
Tin Louie
Marco Marra
David Masuy
Keith Matthews
Shulamit Michaeli
Jeremy C Mottram
Silke Müller-Auer
Heather Munden
Siri Nelson
Halina Norbertczak
Karen Oliver
Susan O'neil
Martin Pentony
Thomas M Pohl
Claire Price
Bénédicte Purnelle
Michael A Quail
Ester Rabbinowitsch
Richard Reinhardt
Michael Rieger
Joel Rinta
Johan Robben
Laura Robertson
Jeronimo C Ruiz
Simon Rutter
David Saunders
Melanie Schäfer
Jacquie Schein
David C Schwartz
Kathy Seeger
Amber Seyler
Sarah Sharp
Heesun Shin
Dhileep Sivam
Rob Squares
Steve Squares
Valentina Tosato
Christy Vogt
Guido Volckaert
Rolf Wambutt
Tim Warren
Holger Wedler
John Woodward
Shiguo Zhou
Wolfgang Zimmermann
Deborah F Smith
Jenefer M Blackwell
Kenneth D Stuart
Bart Barrell
Peter J Myler
Wellcome Sanger Institute · GBKU Leuven · BEGATC Biotech (Germany) · DE

Funding

LEISHMANIA GENOMEU01AI040599 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI STUART, KENNETH D · 2000 to 2002
$2.9M
Transcription of Protein-coding Genes in LeishmaniaR01AI053667 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI MYLER, PETER JOHN · 2003 to 2010
$2.8M
LEISHMANIA GENOMER01AI040599 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI STUART, KENNETH D · 1997 to 1999
–
NIAID NIH HHS R01 AI040599NIAID NIH HHS R01 AI053667Wellcome Trust
6 · The paper itself

Abstract

Leishmania species cause a spectrum of human diseases in tropical and subtropical regions of the world. We have sequenced the 36 chromosomes of the 32.8-megabase haploid genome of Leishmania major (Friedlin strain) and predict 911 RNA genes, 39 pseudogenes, and 8272 protein-coding genes, of which 36% can be ascribed a putative function. These include genes involved in host-pathogen interactions, such as proteolytic enzymes, and extensive machinery for synthesis of complex surface glycoconjugates. The organization of protein-coding genes into long, strand-specific, polycistronic clusters and lack of general transcription factors in the L. major, Trypanosoma brucei, and Trypanosoma cruzi (Tritryp) genomes suggest that the mechanisms regulating RNA polymerase II-directed transcription are distinct from those operating in other eukaryotes, although the trypanosomatids appear capable of chromatin remodeling. Abundant RNA-binding proteins are encoded in the Tritryp genomes, consistent with active posttranscriptional regulation of gene expression.

Indexed as

Genome, ProtozoanSequence Analysis, DNAAnimalsChromatinGene Expression RegulationGenes, ProtozoanGenes, rRNAGlycoconjugatesLeishmania majorLeishmaniasis, CutaneousLipid MetabolismMembrane ProteinsMolecular Sequence DataMultigene FamilyProtein BiosynthesisProtein Processing, Post-TranslationalChromatinGlycoconjugatesMembrane ProteinsProtozoan ProteinsRNA, Protozoan

Identifiers

PMID16020728
PMCPMC1470643
OpenAlexW2168799765

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.