Evidence map›Paper›PMID 16015368›Full record

ArticleGenes and immunity2005

Variants of CCR5, which are permissive for HIV-1 infection, show distinct functional responses to CCL3, CCL4 and CCL5.

H-F Dong, K Wigmore, M N Carrington, M Dean, J A Turpin, O M Z Howard

Open access · bronzeAbstract read
In one paragraph

Article in Genes and immunity, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 2 countries.

H-F DongBasic Research Program, SAIC Frederick, MD 21702, USA.
K Wigmore
M N Carrington
M Dean
J A Turpin
O M Z Howard
Science Applications International Corporation (United States) · USFrederick National Laboratory for Cancer Research · USNational Cancer Institute · USNational Institutes of Health · USOntario Institute for Cancer Research · CA

Funding

Single Nucleotide Polymorphisms in Cancer Related GenesZ01BC005652 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI DEAN, MICHAEL · 1996 to 2008
$1.9M
HLA AND INFECTIOUS DISEASEZ01BC010269 · BC · BASIC SCIENCES · PI CARRINGTON, MARY N. · 1997 to 2006
–
NCI NIH HHS N01 CO012400NCI NIH HHS N01-CO-12400NCI NIH HHS Z01 BC005652-15
6 · The paper itself

Abstract

CCR5 is one of the primary coreceptors for Env-mediated fusion between cells and human immunodeficiency virus type 1 (HIV-1). Analyses of CCR5 variants in cohorts of HIV-1 high-risk individuals led to the identification of multiple single amino-acid substitutions, which may have functional consequences. This study focused on eight naturally occurring allelic variants located between amino-acid residues 60 and 334 of CCR5. All studied allelic variants were highly expressed on the cell surface of HEK-293 cells and permissive for HIV-1 infection. Variant G301V showed 3.5-fold increase in 50% effective concentration (EC(50)) for CCL4 (MIP 1beta) in a competitive binding assay. There was also a significant reduction in CCL5 (RANTES) EC(50) for the R223Q, A335V and Y339F variants. The most unexpected functional abnormality was exhibited by the R60S variant that exhibited a loss of ligand-induced desensitization in chemotaxis assays, but showed normal CCL4 and CCL5 binding avidity. This mutation is located in the first intracellular loop, a domain that has not previously been shown to be involved in receptor desensitization. In conclusion, our results support earlier studies showing that these naturally occurring point mutations do not limit HIV-1 infection, and indicated that single amino-acid changes can have unexpected functional consequences.

Indexed as

HIV-1AllelesAmino Acid SequenceAmino Acid SubstitutionCalcium SignalingCell LineChemokine CCL3Chemokine CCL4Chemokine CCL5Chemokines, CCChemotaxisGenetic VariationHumansLigandsMacrophage Inflammatory ProteinsMolecular Sequence DataCCL4 protein, humanChemokine CCL3Chemokine CCL4Chemokine CCL5Chemokines, CCLigandsMacrophage Inflammatory ProteinsReceptors, CCR5

Identifiers

PMID16015368
PMCPMC1369982
OpenAlexW2070910058

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.