Evidence map›Paper›PMID 16014925›Full record

ArticleJournal of virology2005

Evidence that low-level viremias during effective highly active antiretroviral therapy result from two processes: expression of archival virus and replication of virus.

Nicole H Tobin, Gerald H Learn, Sarah E Holte, Yang Wang, Ann J Melvin, Jennifer L McKernan, Diane M Pawluk, Kathleen M Mohan, Paul F Lewis, James I Mullins and 1 more

Abstract readComparative Study
In one paragraph

Article in Journal of virology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 149 papers.

0numbers the graph read from it
0cells of the map it votes in
149citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

149 citing papers in PubMed, 217 citations in OpenAlex.

  1. Trial
  2. Modelling HIV-1 2-LTR dynamics following raltegravir intensification.Journal of the Royal Society, Interface · 2013
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  12. Proviruses in CD4Science translational medicine · 2025
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89 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Nicole H TobinDepartment of Pediatrics, University of Washington, Seattle, WA, USA.
Gerald H Learn
Sarah E Holte
Yang Wang
Ann J Melvin
Jennifer L McKernan
Diane M Pawluk
Kathleen M Mohan
Paul F Lewis
James I Mullins
Lisa M Frenkel
University of Washington · USOregon Health & Science University · US

Funding

THERAPY EFFECTS ON HIV 1 POPULATION DYNAMICS IN CHILDRENR01HD036184 · NICHD · SEATTLE CHILDREN'S HOSPITAL · PI FRENKEL, LISA M · 1998 to 2002
$1.2M
6 · The paper itself

Abstract

Episodes of low-level viremia (LLV), with plasma human immunodeficiency virus type 1 (HIV-1) RNA levels ranging from 50 to 400 copies (c)/ml, occur commonly during highly active antiretroviral therapy (HAART). LLV has been associated with virologic failure of HAART in some studies, while in others LLV did not appear to affect the clinical outcome. To understand the processes leading to LLV, genetic analyses were used to determine whether plasma virions emanated from archived or from newly evolved viral genomes. Episodes of LLV (plasma HIV-1 RNA, 50 to 379 [median, 77] c/ml) were detected in 21/37 (57%) HIV-1-infected children with median plasma HIV-1 RNA levels of <50 c/ml during 79 patient years of HAART. Viral sequences were derived by direct sequencing of PCR products from 21 plasma specimens diluted to end point. In phylogenetic analysis, LLV viral sequences grouped with virus from early in the course of infection in 8/11 subjects. Six specimens had multiple identical viral sequences, suggesting origin from clonally expanded infected cells. LLV plasma virus evolved over time, indicating viral replication, in 3/11 subjects. Two of these had frequent LLV, including the selection of drug-resistant mutants. In summary, plasma virus from episodes of LLV during effective HAART appeared to originate from two distinct processes, (i) clonal outgrowth from long-lived HIV-1-infected cells, presumably following activation and proliferation of these cells, and (ii) ongoing viral replication that included the selection of new drug-resistant mutants. These observations provide a plausible explanation for the divergent clinical outcomes previously associated with LLV.

Indexed as

Amino Acid SequenceAnti-Retroviral AgentsAntiretroviral Therapy, Highly ActiveChildDrug Resistance, ViralGene Products, polGenome, ViralHIV-1HIV InfectionsHumansMolecular Sequence DataMutationPhylogenySequence AlignmentSequence AnalysisViral LoadAnti-Retroviral AgentsGene Products, pol

Identifiers

PMID16014925
PMCPMC1181593
OpenAlexW2145449008

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.