Evidence map›Paper›PMID 16014920›Full record

ArticleJournal of virology2005

Regulation of Apobec3F and human immunodeficiency virus type 1 Vif by Vif-Cul5-ElonB/C E3 ubiquitin ligase.

Bindong Liu, Phuong Thi Nguyen Sarkis, Kun Luo, Yunkai Yu, Xiao-Fang Yu

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Journal of virology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 91 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
91citing papers in PubMed, 1 pooled it
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

91 citing papers in PubMed, 1 synthesis or guideline pooled it, 143 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Interactions of APOBEC3s with DNA and RNA.Current opinion in structural biology · 2021
    Review
  9. Article
  10. Review
  11. Article
  12. Review
  13. Role of the Ubiquitin Proteasome System (UPS) in the HIV-1 Life Cycle.International journal of molecular sciences · 2019
    Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Review

31 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Bindong LiuDepartment of Microbiology and Immunology, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD 21205, USA.
Phuong Thi Nguyen Sarkis
Kun Luo
Yunkai Yu
Xiao-Fang Yu
Johns Hopkins University · USZhejiang University · CN

Funding

Role of Cul5 E3 ubiquitin ligase in HIV Vif functionR01AI062644 · NIAID · JOHNS HOPKINS UNIVERSITY · PI YU, XIAO-FANG · 2004 to 2008
$1.6M
Role of Cul5 E3 Ubiquitin ligasae in HIV Vif function: A novel regulatorR56AI062644 · NIAID · JOHNS HOPKINS UNIVERSITY · PI YU, XIAO-FANG · 2010 to 2010
$369k
NIAID NIH HHS AI062644NIAID NIH HHS R01 AI062644NIAID NIH HHS R56 AI062644
6 · The paper itself

Abstract

The human cytidine deaminase Apobec3F (h-A3F), a protein related to the previously recognized antiviral factor Apobec3G (h-A3G), has antiviral activity against human immunodeficiency virus type 1 (HIV-1) that is suppressed by the viral protein Vif. The mechanism of HIV-1 Vif-mediated suppression of h-A3F is not fully understood. Here, we demonstrate that while h-A3F, like h-A3G, was able to suppress primate lentiviruses other than HIV-1 (simian immunodeficiency virus from African green monkeys [SIVagm] and Rhesus macaques [SIVmac]), the interaction between Vif proteins and h-A3F appeared to differ from that with h-A3G. H-A3F showed no change in its species specificity against HIV-1 or SIVagm Vif when a negatively charged amino acid was replaced with a lysine at position 128, a residue critical for h-A3G recognition by HIV-1 Vif. However, HIV-1 Vif, but not SIVagm Vif, was able to bind h-A3F and induce its polyubiquitination and degradation through the Cul5-containing E3 ubiquitin ligase. Interference with Cul5-E3 ligase function by depletion of Cul5, through RNA interference or overexpression of Cul5 mutants, blocked the ability of HIV-1 Vif to suppress h-A3F. A BC-box mutant of HIV-1 Vif that failed to recruit Cul5-E3 ligase but was still able to interact with h-A3F failed to suppress h-A3F. Interestingly, interference with Cul5-E3 ligase function or overexpression of h-A3F or h-A3G also increased the stability of HIV-1 Vif, suggesting that like the substrate molecules h-A3F and h-A3G, the substrate receptor protein Vif is itself also regulated by Cul5-E3 ligase. Our results indicate that Cul5-E3 ligase appears to be a common pathway hijacked by HIV-1 Vif to defeat both h-A3F and h-A3G. Developing inhibitors to disrupt the interaction between Vif and Cul5-E3 ligase could be therapeutically useful, allowing multiple host antiviral factors to suppress HIV-1.

Indexed as

Antiviral AgentsCell LineCullin ProteinsCytosine DeaminaseGene DeletionGene Products, vifHIV-1HumansLentiviruses, PrimateUbiquitin-Protein Ligase ComplexesUbiquitin-Protein Ligasesvif Gene Products, Human Immunodeficiency VirusVirus ReplicationAntiviral AgentsAPOBEC3F protein, humanCUL5 protein, humanCullin ProteinsCytosine DeaminaseGene Products, vifUbiquitin-Protein Ligase ComplexesUbiquitin-Protein Ligasesvif Gene Products, Human Immunodeficiency Virus

Identifiers

PMID16014920
PMCPMC1181563
OpenAlexW2157356733

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.