Evidence map›Paper›PMID 16014529›Full record

ReviewAnnals of the New York Academy of Sciences2005

DNA lesions and repair in immunoglobulin class switch recombination and somatic hypermutation.

Zhenming Xu, Zsolt Fulop, Yuan Zhong, Albert J Evinger, Hong Zan, Paolo Casali

Abstract readReview
In one paragraph

Review in Annals of the New York Academy of Sciences, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Immunodeficiency in Bloom's Syndrome.Journal of clinical immunology · 2018
    Article
  8. Article
  9. Review
  10. Review
  11. Review
  12. Article
  13. Nijmegen breakage syndrome (NBS).Orphanet journal of rare diseases · 2012
    Review
  14. Article
  15. Mismatch-mediated error prone repair at the immunoglobulin genes.Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie · 2011
    Review
  16. Article
  17. Article
  18. Mobile elements reveal small population size in the ancient ancestors of Homo sapiens.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Zhenming XuCenter for Immunology, 3028 Hewitt Hall, University of California, Irvine, CA 92697-4120, USA.
Zsolt Fulop
Yuan Zhong
Albert J Evinger
Hong Zan
Paolo Casali
University of California, Irvine · US

Funding

Immunoglobulin class switch DNA recombinationR01AI045011 · NIAID · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI CASALI, PAOLO · 2000 to 2011
$3.8M
SOMATIC HYPERMUTATION IN HUMAN B CELLSR01AR040908 · NIAMS · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI CASALI, PAOLO · 1992 to 2005
$1.8M
Immunoglobulin class switch DNA recombinationR56AI045011 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI CASALI, PAOLO · 2012 to 2012
$523k
NIAID NIH HHS AI 45011NIAID NIH HHS R01 AI045011NIAID NIH HHS R56 AI045011NIAMS NIH HHS AR 40908NIAMS NIH HHS R01 AR040908
6 · The paper itself

Abstract

Immunoglobulin (Ig) gene somatic hypermutation (SHM) and class switch DNA recombination (CSR) are critical for the maturation of the antibody response. These processes endow antibodies with increased antigen-binding affinity and acquisition of new biological effector functions, thereby underlying the generation of memory B cells and plasma cells. They are dependent on the generation of specific DNA lesions and the intervention of activation-induced cytidine deaminase as well as newly identified translesion DNA polymerases, which are expressed in germinal center B cells. DNA lesions include mismatches, abasic sites, nicks, single-strand breaks, and double-strand breaks (DSBs). DSBs in the switch (S) region DNA are critical for CSR, but they also occur in V(D)J regions and possibly contribute to the events that lead to SHM. The nature of the DSBs in the Ig locus, their generation, and the repair processes that they trigger and that are responsible for their regulation remain poorly understood. Aberrant regulation of these events can result in chromosomal breaks and translocations, which are significant steps in B-cell neoplastic transformation.

Indexed as

DNA DamageDNA RepairRecombination, GeneticAICDA (Activation-Induced Cytidine Deaminase)AnimalsCytidine DeaminaseDNA-Directed DNA PolymeraseEnzyme ActivationGene Rearrangement, B-LymphocyteGenes, ImmunoglobulinHumansImmunoglobulin Class SwitchingModels, GeneticPhylogenySomatic Hypermutation, ImmunoglobulinAICDA (Activation-Induced Cytidine Deaminase)Cytidine DeaminaseDNA-Directed DNA Polymerase

Identifiers

PMID16014529
PMCPMC4621013
OpenAlexW2147930315

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.