Evidence map›Paper›PMID 16010583›Full record

ArticleJournal of molecular medicine (Berlin, Germany)2005

Consequence of functional Nod2 and Tlr4 mutations on gene transcription in Crohn's disease patients.

Henri Braat, Pieter Stokkers, Tijmen Hommes, Danny Cohn, Esther Vogels, Inge Pronk, Arnold Spek, Antoine van Kampen, Sander van Deventer, Maikel Peppelenbosch and 1 more

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In one paragraph

Article in Journal of molecular medicine (Berlin, Germany), 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 2 pooled it
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 2 syntheses or guidelines pooled it, 59 citations in OpenAlex.

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  14. NOD takes its toll but stays in the CARDs in Crohn's disease.Journal of molecular medicine (Berlin, Germany) · 2005
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Henri BraatDepartment of Experimental Internal Medicine, Academic Medical Center, P.O. Box 22700, Meibergdreef 9, 1100 DE Amsterdam, The Netherlands.
Pieter Stokkers
Tijmen Hommes
Danny Cohn
Esther Vogels
Inge Pronk
Arnold Spek
Antoine van Kampen
Sander van Deventer
Maikel Peppelenbosch
Daan Hommes
Academic Medical Center · NLUniversity of Groningen · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The concept that mutations in germ-line encoded pattern recognition receptors with immune activating functions are associated with an increased incidence in Crohn's disease (CD) is gaining acceptance. Whether these mutations have similar or distinct effects on cellular physiology remains obscure. The incidence of three single nucleotide polymorphisms (SNPs) within the Nod2 gene and one functional SNP within both the Tlr4 and Tlr5 gene in a Dutch cohort of 637 patients with inflammatory bowel disease and 127 controls was investigated. The functional consequence of mutant NOD2 and TLR4 was investigated by comparing gene expression profiles after stimulation of monocyte-derived dendritic cells (DCs) from homozygous TLR4- and NOD2-mutant patients with lipopolysaccharides and peptidoglycan, respectively. We observed that the R702W and 1007fs Nod2 alleles and the A299G Tlr4 alleles were significantly more prevalent in patients with CD as compared to healthy controls or patients with ulcerative colitis. The phenotype of TLR4- and NOD2-mutant DCs is distinct, but a large number of genes are up- or down-regulated concordantly. These data provide a concept for the genetic basis of CD; mutations in innate immunity cause similar effects on gene transcription and finally result in comparable clinical disease presentation.

Indexed as

Transcription, GeneticAdultCrohn DiseaseDendritic CellsFemaleHumansInflammatory Bowel DiseasesIntracellular Signaling Peptides and ProteinsMaleMiddle AgedMutationNod2 Signaling Adaptor ProteinPolymorphism, GeneticToll-Like Receptor 4Toll-Like Receptor 5Intracellular Signaling Peptides and ProteinsNOD2 protein, humanNod2 Signaling Adaptor ProteinTLR4 protein, humanToll-Like Receptor 4Toll-Like Receptor 5

Identifiers

PMID16010583
OpenAlexW2114219533

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.