Evidence map›Paper›PMID 16009940›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2005

Human ISG15 conjugation targets both IFN-induced and constitutively expressed proteins functioning in diverse cellular pathways.

Chen Zhao, Carilee Denison, Jon M Huibregtse, Steven Gygi, Robert M Krug

Open access · greenAbstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 249 papers.

0numbers the graph read from it
0cells of the map it votes in
249citing papers in PubMed
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

249 citing papers in PubMed, 462 citations in OpenAlex.

  1. Review
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  3. International journal of molecular medicine · 2026
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189 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Chen ZhaoInstitute for Cellular and Molecular Biology, University of Texas, 2500 Speedway, Austin, TX 78712, USA.
Carilee Denison
Jon M Huibregtse
Steven Gygi
Robert M Krug
The University of Texas at Austin · USHarvard University · US

Funding

REPLICATION OF INFLUENZA VIRUSR01AI011772 · NIAID · UNIVERSITY OF TEXAS AUSTIN · PI KRUG, ROBERT M · 1985 to 2017
$10.7M
New Sample Multiplexing Technologies to Identify Chemical Probes and Illuminate Ubiquitin BiologyR01GM067945 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI GYGI, STEVEN P · 2003 to 2024
$10.5M
Specificity of Ubiquitination: the HPVE6/E6AP ParadigmR01CA072943 · NCI · UNIVERSITY OF TEXAS AUSTIN · PI HUIBREGTSE, JON · 1997 to 2011
$3.2M
TECHNOLOGY FOR AUTOMATED ANALYSIS OF PROTEOMESK22HG000041 · NHGRI · UNIVERSITY OF WASHINGTON · PI GYGI, STEVEN P · 2000 to 2004
$1.2M
REPLICATION OF INFLUENZA VIRUSR37AI011772 · NIAID · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI KRUG, ROBERT M · 1987 to 1996
–
INSTITUTIONAL TRAINING GRANT IN GENOMIC SCIENCET32HG000041 · NHGRI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI SMITH, TEMPLE F · 1995 to 1999
–
NCI NIH HHS CA72943NCI NIH HHS R01 CA072943NHGRI NIH HHS HG00041NHGRI NIH HHS K22 HG000041NHGRI NIH HHS T32 HG000041NIAID NIH HHS AI11772NIAID NIH HHS R01 AI011772NIGMS NIH HHS GM67945NIGMS NIH HHS R01 GM067945
6 · The paper itself

Abstract

IFN-alpha/beta plays an essential role in innate immunity against viral and bacterial infection. Among the proteins induced by IFN-alpha/beta are the ubiquitin-like ISG15 protein and its E1- (Ube1L) and E2- (UbcH8) conjugating enzymes, leading to the conjugation of ISG15 to cellular proteins. It is likely that ISG15 conjugation plays an important role in antiviral response because a human virus, influenza B virus, inhibits ISG15 conjugation. However, the biological function of ISG15 modification remains unknown, largely because only a few human ISG15 target proteins have been identified. Here we purify ISG15-modified proteins from IFN-beta-treated human (HeLa) cells by using double-affinity selection and use mass spectroscopy to identify a large number (158) of ISG15 target proteins. Eight of these proteins were subjected to further analysis and verified to be ISG15 modified in IFN-beta-treated cells, increasing the likelihood that most, if not all, targets identified by mass spectroscopy are bona fide ISG15 targets. Several of the targets are IFN-alpha/beta-induced antiviral proteins, including PKR, MxA, HuP56, and RIG-I, providing a rationale for the inhibition of ISG15 conjugation by influenza B virus. Most targets are constitutively expressed proteins that function in diverse cellular pathways, including RNA splicing, chromatin remodeling/polymerase II transcription, cytoskeleton organization and regulation, stress responses, and translation. These results indicate that ISG15 conjugation impacts nuclear as well as cytoplasmic functions. By targeting a wide array of constitutively expressed proteins, ISG15 conjugation greatly extends the repertoire of cellular functions that are affected by IFN-alpha/beta.

Indexed as

Antiviral AgentsCytokinesDEAD Box Protein 58DEAD-box RNA HelicaseseIF-2 KinaseGTP-Binding ProteinsHeLa CellsHumansImmunity, InnateInfluenza B virusInterferon Type IMass SpectrometryMyxovirus Resistance ProteinsReceptors, ImmunologicRNA HelicasesUbiquitin-Activating EnzymesAntiviral AgentsCytokinesDEAD Box Protein 58DEAD-box RNA HelicaseseIF-2 KinaseGTP-Binding ProteinsInterferon Type IISG15 protein, humanMX1 protein, humanMyxovirus Resistance ProteinsReceptors, ImmunologicRIGI protein, humanRNA HelicasesUBA1 protein, humanUBE2L6 protein, humanUbiquitin-Activating EnzymesUbiquitin-Conjugating EnzymesUbiquitins

Identifiers

PMID16009940
PMCPMC1177427
OpenAlexW2086601777

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.