Evidence map›Paper›PMID 16006531›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2005

Genomic imprinting recapitulated in the human beta-globin locus.

Keiji Tanimoto, Motoshi Shimotsuma, Hitomi Matsuzaki, Akane Omori, Jörg Bungert, James Douglas Engel, Akiyoshi Fukamizu

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 44 citations in OpenAlex.

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  13. New insights into establishment and maintenance of DNA methylation imprints in mammals.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2013
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Keiji TanimotoGraduate School of Life and Environmental Sciences, Center for Tsukuba Advanced Research Alliance, University of Tsukuba, Tsukuba, Ibaraki 305-8577, Japan. keiji@tara.tsukuba.ac.jp
Motoshi Shimotsuma
Hitomi Matsuzaki
Akane Omori
Jörg Bungert
James Douglas Engel
Akiyoshi Fukamizu
University of Tsukuba · JPUniversity of Florida · US

Funding

STRUCTURE/FUNCTION OF THE HUMAN B-GLOBIN LCRR01DK052356 · NIDDK · UNIVERSITY OF FLORIDA · PI BUNGERT, JORG · 1997 to 2017
$4.7M
EXPRESSION OF DEVELOPMENTALLY RELATED AVIAN GENESR01HL024415 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ENGEL, JAMES DOUGLAS · 1985 to 2009
$3.3M
DRED repression of embryonic/fetal globin gene transcription*R01HL073465 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ENGEL, JAMES DOUGLAS · 2003 to 2005
$866k
NHLBI NIH HHS HL24415NHLBI NIH HHS HL73465NHLBI NIH HHS R01 HL024415NHLBI NIH HHS R01 HL073465NIDDK NIH HHS R01 DK052356
6 · The paper itself

Abstract

A subset of genes in mammals are subject to genomic imprinting. The mouse H19 gene, for example, is active only when maternally inherited and the neighboring Igf2 gene is paternally expressed. This imprinted expression pattern is regulated by the imprinting control region (ICR) upstream of the H19 gene. A maternally inherited H19 ICR inhibits Igf2 gene activation by the downstream enhancer due to its insulator function while it suppresses H19 gene transcription by promoter DNA methylation when paternally inherited. These parent-of-origin specific functions depend on the allele-specific methylation of the ICR DNA, which is established during gametogenesis. Therefore, the ICR may also function as a landmark for epigenetic modifications. To examine whether the ICR confers these activities autonomously, we introduced a 2.9-kbp ICR-containing DNA fragment into a human beta-globin yeast artificial chromosome at the 3' end of the locus control region and established transgenic mouse lines. Expression of all of the beta-like globin genes was higher when the transgene was paternally inherited. In accord with this result, transgenic ICR DNA from nucleated erythrocytes was more heavily methylated when paternally transmitted. Chromatin immunoprecipitation assays confirmed that CCCTC binding factor is preferentially recruited to the maternal transgenic ICR in vivo. Surprisingly however, the parent-of-origin specific methylation pattern was not observed in germ cell DNA in testis, demonstrating that methylation was established after fertilization. Thus, the ICR autonomously recapitulated imprinting within the normally nonimprinted transgenic beta-globin gene locus, but the temporal establishment of imprinting methylation differs from that at the endogenous Igf2/H19 locus.

Indexed as

DNA MethylationAnimalsChromatin ImmunoprecipitationChromosomes, Artificial, YeastCloning, MolecularErythrocytesFemaleGene Expression RegulationGenomic ImprintingGlobinsHumansInheritance PatternsInsulin-Like Growth Factor IIMaleMiceMice, TransgenicGlobinsIGF2 protein, humanInsulin-Like Growth Factor IIProteins

Identifiers

PMID16006531
PMCPMC1177360
OpenAlexW2062028732

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.