Evidence map›Paper›PMID 16006508›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2005

Molecular architecture and assembly mechanism of Drosophila tripeptidyl peptidase II.

Beate Rockel, Jürgen Peters, Shirley A Müller, Gönül Seyit, Philippe Ringler, Reiner Hegerl, Robert M Glaeser, Wolfgang Baumeister

Open access · greenAbstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 32 citations in OpenAlex.

  1. In situ structural studies of tripeptidyl peptidase II (TPPII) reveal spatial association with proteasomes.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Beate RockelDepartment of Molecular Structural Biology, Max Planck Institute of Biochemistry, D-82152 Martinsried, Germany. rockel@biochem.mpg.de
Jürgen Peters
Shirley A Müller
Gönül Seyit
Philippe Ringler
Reiner Hegerl
Robert M Glaeser
Wolfgang Baumeister
University of Basel · CHUniversity of California, Berkeley · USMax Planck Institute of Biochemistry · DE

Funding

Automation Technology for High Throughput Cryo-EMR01GM062989 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI GLAESER, ROBERT M · 2001 to 2004
$979k
NIGMS NIH HHS GM062989NIGMS NIH HHS R01 GM062989
6 · The paper itself

Abstract

In eukaryotes, tripeptidyl peptidase II (TPPII) is a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. The 150-kDa subunits of Drosophila TPPII assemble into a giant proteolytic complex of 6 MDa with a remarkable architecture consisting of two segmented and twisted strands that form a spindle-shaped structure. A refined 3D model has been obtained by cryoelectron microscopy, which reveals details of the molecular architecture and, in conjunction with biochemical data, provides insight into the assembly mechanism. The building blocks of this complex are apparently dimers, within which the 150-kDa monomers are oriented head to head. Stacking of these dimers leads to the formation of twisted single strands, two of which comprise the fully assembled spindle. This spindle also forms when TPPII is heterologously expressed in Escherichia coli, demonstrating that no scaffolding protein is required for complex formation and length determination. Reciprocal interactions of the N-terminal part of subunits from neighboring strands are probably involved in the formation of the native quaternary structure, lending the TPPII spindle a stability higher than that of single strands.

Indexed as

Models, MolecularAminopeptidasesAnimalsCryoelectron MicroscopyDipeptidyl-Peptidases and Tripeptidyl-PeptidasesDrosophilaEndopeptidase KEscherichia coliImaging, Three-DimensionalMicroscopy, ElectronSerine EndopeptidasesAminopeptidasesDipeptidyl-Peptidases and Tripeptidyl-PeptidasesEndopeptidase KSerine Endopeptidasestripeptidyl-peptidase 2

Identifiers

PMID16006508
PMCPMC1177415
OpenAlexW2018492933

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.