Evidence map›Paper›PMID 16002470›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2005

Adult mouse brain gene expression patterns bear an embryologic imprint.

Matthew A Zapala, Iiris Hovatta, Julie A Ellison, Lisa Wodicka, Jo A Del Rio, Richard Tennant, Wendy Tynan, Ron S Broide, Rob Helton, Barbara S Stoveken and 7 more

Abstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 105 papers.

0numbers the graph read from it
0cells of the map it votes in
105citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

105 citing papers in PubMed.

  1. Article
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  3. Review
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  12. The Modification of Offspring Stress-Related Behavior and the Expression ofInternational journal of molecular sciences · 2022
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Frontiers in neuroscience · 2021
    Article
  18. StandardizedAntioxidants (Basel, Switzerland) · 2020
    Article
  19. Article
  20. Article

45 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Matthew A ZapalaLaboratory of Genetics, The Salk Institute for Biological Studies, 10010 North Torrey Pines Road, La Jolla, CA 92037, USA.
Iiris Hovatta
Julie A Ellison
Lisa Wodicka
Jo A Del Rio
Richard Tennant
Wendy Tynan
Ron S Broide
Rob Helton
Barbara S Stoveken
Christopher Winrow
Daniel J Lockhart
John F Reilly
Warren G Young
Floyd E Bloom
David J Lockhart
Carrolee Barlow

Funding

Molecular Genetic Mapping of the Mouse BrainR01MH062344 · NIMH · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI BARLOW, CARROLEE · 2001 to 2003
$4.0M
Defining a Role for ATM in the Nervous SystemR01NS039601 · NINDS · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI BARLOW, CARROLEE · 2001 to 2004
$1.8M
NIMH NIH HHS R01 MH062344NINDS NIH HHS NS039601-04NINDS NIH HHS NS062344-03NINDS NIH HHS R01 NS039601
6 · The paper itself

Abstract

The current model to explain the organization of the mammalian nervous system is based on studies of anatomy, embryology, and evolution. To further investigate the molecular organization of the adult mammalian brain, we have built a gene expression-based brain map. We measured gene expression patterns for 24 neural tissues covering the mouse central nervous system and found, surprisingly, that the adult brain bears a transcriptional "imprint" consistent with both embryological origins and classic evolutionary relationships. Embryonic cellular position along the anterior-posterior axis of the neural tube was shown to be closely associated with, and possibly a determinant of, the gene expression patterns in adult structures. We also observed a significant number of embryonic patterning and homeobox genes with region-specific expression in the adult nervous system. The relationships between global expression patterns for different anatomical regions and the nature of the observed region-specific genes suggest that the adult brain retains a degree of overall gene expression established during embryogenesis that is important for regional specificity and the functional relationships between regions in the adult. The complete collection of extensively annotated gene expression data along with data mining and visualization tools have been made available on a publicly accessible web site (www.barlow-lockhart-brainmapnimhgrant.org).

Indexed as

Biological EvolutionGene Expression ProfilingGene Expression Regulation, DevelopmentalModels, NeurologicalAlgorithmsAnimalsCentral Nervous SystemCluster AnalysisDatabases, GeneticMiceMicroarray Analysis

Identifiers

PMID16002470
PMCPMC1173363

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.