Evidence map›Paper›PMID 16001362›Full record

ArticleAmerican journal of human genetics2005

An autosomal dominant cerebellar ataxia linked to chromosome 16q22.1 is associated with a single-nucleotide substitution in the 5' untranslated region of the gene encoding a protein with spectrin repeat and Rho guanine-nucleotide exchange-factor domains.

Kinya Ishikawa, Shuta Toru, Taiji Tsunemi, Mingshun Li, Kazuhiro Kobayashi, Takanori Yokota, Takeshi Amino, Kiyoshi Owada, Hiroto Fujigasaki, Masaki Sakamoto and 17 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 129 citations in OpenAlex.

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  7. Repeat-associated non-AUG (RAN) translation: insights from pathology.Laboratory investigation; a journal of technical methods and pathology · 2019
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  14. Tyrosine phosphorylation of Dbl regulates GTPase signaling.The Journal of biological chemistry · 2014
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 9 institutions in 1 country.

Kinya IshikawaDepartment of Neurology and Neurological Science, Graduate School, Tokyo Medical and Dental University, Yushima, Tokyo, Japan.
Shuta Toru
Taiji Tsunemi
Mingshun Li
Kazuhiro Kobayashi
Takanori Yokota
Takeshi Amino
Kiyoshi Owada
Hiroto Fujigasaki
Masaki Sakamoto
Hiroyuki Tomimitsu
Minoru Takashima
Jiro Kumagai
Yoshihiro Noguchi
Yoshiyuki Kawashima
Norio Ohkoshi
Gen Ishida
Manabu Gomyoda
Mari Yoshida
Yoshio Hashizume
Yuko Saito
Shigeo Murayama
Hiroshi Yamanouchi
Toshio Mizutani
Ikuko Kondo
Tatsushi Toda
Hidehiro Mizusawa
Tokyo Medical and Dental University · JPAichi Medical University · JPNational Institute of Technology, Matsue College · JPOsaka University · JPTokyo Metropolitan Institute of Gerontology · JPEhime University · JPTokyo Metropolitan Geriatric Hospital · JPTokyo Metropolitan Neurological Hospital · JPUniversity of Tsukuba · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Autosomal dominant cerebellar ataxia (ADCA) is a group of heterogeneous neurodegenerative disorders. By positional cloning, we have identified the gene strongly associated with a form of degenerative ataxia (chromosome 16q22.1-linked ADCA) that clinically shows progressive pure cerebellar ataxia. Detailed examination by use of audiogram suggested that sensorineural hearing impairment may be associated with ataxia in our families. After restricting the candidate region in chromosome 16q22.1 by haplotype analysis, we found that all patients from 52 unrelated Japanese families harbor a heterozygous C-->T single-nucleotide substitution, 16 nt upstream of the putative translation initiation site of the gene for a hypothetical protein DKFZP434I216, which we have called "puratrophin-1" (Purkinje cell atrophy associated protein-1). The full-length puratrophin-1 mRNA had an open reading frame of 3,576 nt, predicted to contain important domains, including the spectrin repeat and the guanine-nucleotide exchange factor (GEF) for Rho GTPases, followed by the Dbl-homologous domain, which indicates the role of puratrophin-1 in intracellular signaling and actin dynamics at the Golgi apparatus. Puratrophin-1--normally expressed in a wide range of cells, including epithelial hair cells in the cochlea--was aggregated in Purkinje cells of the chromosome 16q22.1-linked ADCA brains. Consistent with the protein prediction data of puratrophin-1, the Golgi-apparatus membrane protein and spectrin also formed aggregates in Purkinje cells. The present study highlights the importance of the 5' untranslated region (UTR) in identification of genes of human disease, suggests that a single-nucleotide substitution in the 5' UTR could be associated with protein aggregation, and indicates that the GEF protein is associated with cerebellar degeneration in humans.

Indexed as

Chromosomes, Human, Pair 16Genetic Linkage5' Untranslated RegionsAnimalsAntibodiesBrainCloning, MolecularDNA Mutational AnalysisDNA PrimersExonsFamily HealthGenetic MarkersGenotypeGolgi ApparatusGuanine Nucleotide Exchange FactorsHaplotypes5' Untranslated RegionsAntibodiesDNA PrimersGenetic MarkersGuanine Nucleotide Exchange FactorsPLEKHG4 protein, humanrho GTP-Binding ProteinsRNA, MessengerSpectrin

Identifiers

PMID16001362
PMCPMC1224530
OpenAlexW2122524481

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.