Evidence map›Paper›PMID 16000488›Full record

ArticleJournal of clinical microbiology2005

Evaluation of seaFAST, a rapid fluorescent in situ hybridization test, for detection of Helicobacter pylori and resistance to clarithromycin in paraffin-embedded biopsy sections.

Julie M Morris, Alisa L Reasonover, Michael G Bruce, Dana L Bruden, Brian J McMahon, Frank D Sacco, Douglas E Berg, Alan J Parkinson

Open access · greenAbstract readEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Review
  3. Rapid identification ofThe journal of pathology. Clinical research · 2017
    Article
  4. Treatment of Helicobacter pylori infection: Past, present and future.World journal of gastrointestinal pathophysiology · 2014
    Review
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Optimal therapy for Helicobacter pylori infections.Nature reviews. Gastroenterology & hepatology · 2011
    Review
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Julie M MorrisArctic Investigations Program, CDC, 4055 Tudor Centre Drive, Anchorage, AK 99508, USA. jmorris@cdc.gov
Alisa L Reasonover
Michael G Bruce
Dana L Bruden
Brian J McMahon
Frank D Sacco
Douglas E Berg
Alan J Parkinson
Centers for Disease Control and Prevention · USAlaska Native Tribal Health Consortium · USWashington University in St. Louis · US

Funding

H. PYLORI INFECTION AND GI DISEASE IN ALASKA NATIVESR01DK053727 · NIDDK · WASHINGTON UNIVERSITY · PI BERG, DOUGLAS EUGENE · 1999 to 2003
$1.3M
NIDDK NIH HHS DK 53727
6 · The paper itself

Abstract

A commercially available rapid fluorescent in situ hybridization (FISH) test, (seaFAST H. pylori Combi-Kit; SeaPro Theranostics International, Lelystad, The Netherlands) was used to simultaneously detect the presence of Helicobacter pylori and determine clarithromycin susceptibility in paraffin-embedded biopsy sections. The FISH method was found to be 97% sensitive, 94% specific for the detection of H. pylori and comparable to agar dilution for the detection of resistance to clarithromycin.

Indexed as

Drug Resistance, BacterialReagent Kits, DiagnosticAnti-Bacterial AgentsBiopsyClarithromycinCulture MediaFluorescent DyesHelicobacter InfectionsHelicobacter pyloriHumansIn Situ Hybridization, FluorescenceMicrobial Sensitivity TestsParaffin EmbeddingSensitivity and SpecificityStomachTime FactorsAnti-Bacterial AgentsClarithromycinCulture MediaFluorescent DyesReagent Kits, Diagnostic

Identifiers

PMID16000488
PMCPMC1169084
OpenAlexW2154239845

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.