Evidence map›Paper›PMID 15998740›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2005

Stable barley chromosomes without centromeric repeats.

S Nasuda, S Hudakova, I Schubert, A Houben, T R Endo

Abstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 98 papers.

0numbers the graph read from it
0cells of the map it votes in
98citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

98 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. The gap-free genome ofHorticulture research · 2024
    Article
  8. Review
  9. Article
  10. Article
  11. Pan-centromere reveals widespread centromere repositioning of soybean genomes.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  12. Chromosome Rearrangement inPlants (Basel, Switzerland) · 2023
    Article
  13. Molecular Dynamics and Evolution of Centromeres in the Genus Equus.International journal of molecular sciences · 2022
    Review
  14. De novo centromere formation on chromosome fragments with an inactive centromere in maize (Zea mays).Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2021
    Article
  15. Article
  16. Article
  17. Sequence, Chromatin and Evolution of Satellite DNA.International journal of molecular sciences · 2021
    Review
  18. Article
  19. The Genomics of Plant Satellite DNA.Progress in molecular and subcellular biology · 2021
    Review
  20. Review

38 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

S NasudaLaboratory of Plant Genetics, Graduate School of Agriculture and Core Research for Evolutional Science and Technology, Japan Science and Technology Agency, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan.
S Hudakova
I Schubert
A Houben
T R Endo

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The satellite sequences (AGGGAG)(n) and Ty3/gypsy-like retrotransposons are known to localize at the barley centromeres. Using a gametocidal system, which induces chromosomal mutations in barley chromosomes added to common wheat, we obtained an isochromosome for the short arm of barley chromosome 7H (7HS) that lacked the barley-specific satellite sequence (AGGGAG)(n). Two telocentric derivatives of the isochromosome arose in the progeny: 7HS* with and 7HS** without the pericentromeric C-band. FISH analysis demonstrated that both telosomes lacked not only the barley-specific centromeric (AGGGAG)(n) repeats and retroelements but also any of the known wheat centromeric tandem repeats, including the 192-bp, 250-bp, and TaiI sequences. Although they lacked these centromeric repeats, 7HS* and 7HS** both showed normal mitotic and meiotic transmission. Translocation of barley centromeric repeats to a wheat chromosome 4A did not generate a dicentric chromosome. Indirect immunostaining revealed that all tested centromere-specific proteins (rice CENH3, maize CENP-C, and putative barley homologues of the yeast kinetochore proteins CBF5 and SKP1) and histone H3 phosphorylated at serines 10 and 28 localized at the centromeric region of 7HS*. We conclude that the barley centromeric repeats are neither sufficient nor obligatory to assemble kinetochores, and we discuss the possible formation of a novel centromere in a barley chromosome.

Indexed as

Azure StainsCentromereChromosomal Proteins, Non-HistoneChromosomes, PlantFluorescent Antibody Technique, IndirectGene Transfer TechniquesHistonesHordeumIn Situ Hybridization, FluorescenceIsochromosomesKinetochoresRepetitive Sequences, Nucleic AcidRetroelementsTriticumAzure StainsChromosomal Proteins, Non-HistoneHistonesRetroelements

Identifiers

PMID15998740
PMCPMC1175009

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.