Evidence map›Paper›PMID 15998722›Full record

ArticleGenetics2005

Genetic interactions between mediator and the late G1-specific transcription factor Swi6 in Saccharomyces cerevisiae.

Lihong Li, Tina Quinton, Shawna Miles, Linda L Breeden

Abstract readComparative Study
In one paragraph

Article in Genetics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Lihong LiDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA 98109-1024, USA.
Tina Quinton
Shawna Miles
Linda L Breeden

Funding

CELL CYCLE REGULATION OF THE YEAST HO GENER01GM041073 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BREEDEN, LINDA L. · 1994 to 2010
$5.4M
CELL CYCLE REGULATION OF THE YEAST HO GENER29GM041073 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BREEDEN, LINDA L. · 1989 to 1993
–
NIGMS NIH HHS GM41073NIGMS NIH HHS R01 GM041073
6 · The paper itself

Abstract

Swi6 associates with Swi4 to activate HO and many other late G(1)-specific transcripts in budding yeast. Genetic screens for suppressors of SWI6 mutants have been carried out. A total of 112 of these mutants have been identified and most fall into seven complementation groups. Six of these genes have been cloned and identified and they all encode subunits of the mediator complex. These mutants restore transcription to the HO-lacZ reporter in the absence of Swi6 and have variable effects on other Swi6 target genes. Deletions of other nonessential mediator components have been tested directly for suppression of, or genetic interaction with, swi6. Mutations in half of the known subunits of mediator show suppression and/or growth defects in combination with swi6. These phenotypes are highly variable and do not correlate with a specific module of the mediator. Mutations in tail module components sin4 and pgd1 showed both growth defects and suppression when combined with swi6, but a third tail component, gal11, showed neither. A truncated form of the essential Srb7 mediator subunit also suppresses swi6 mutations and shows a defect in recruitment of the tail module components Sin4, Pgd1, and Gal11 to the mediator complex.

Indexed as

Deoxyribonucleases, Type II Site-SpecificG1 PhaseGenetic Complementation TestImmunoprecipitationMediator ComplexMutationNuclear ProteinsRNA, MessengerSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSuppression, GeneticTemperatureTrans-ActivatorsTranscription FactorsTranscription, GeneticDeoxyribonucleases, Type II Site-SpecificGAL11 protein, S cerevisiaeHO protein, S cerevisiaeMediator ComplexNuclear ProteinsPGD1 protein, S cerevisiaeRNA, MessengerSaccharomyces cerevisiae ProteinsSCEI protein, S cerevisiaeSIN4 protein, S cerevisiaeSRB7 protein, S cerevisiaeSWI6 protein, S cerevisiaeTrans-ActivatorsTranscription Factors

Identifiers

PMID15998722
PMCPMC1456765

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.