Evidence map›Paper›PMID 15995199›Full record

ArticleJournal of bacteriology2005

Citrate synthase mutants of Agrobacterium are attenuated in virulence and display reduced vir gene induction.

Maneewan Suksomtip, Pu Liu, Tamara Anderson, Sumalee Tungpradabkul, Derek W Wood, Eugene W Nester

Abstract read
In one paragraph

Article in Journal of bacteriology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

  1. First Record of the Rare SpeciesPathogens (Basel, Switzerland) · 2022
    Article
  2. Article
  3. Agrobacterium: nature's genetic engineer.Frontiers in plant science · 2014
    Article
  4. Article
  5. Article
  6. Article
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Maneewan SuksomtipDepartment of Microbiology, University of Washington, Seattle, 98195-7242, USA.
Pu Liu
Tamara Anderson
Sumalee Tungpradabkul
Derek W Wood
Eugene W Nester
University of Washington · US

Funding

MOLECULAR BASIS OF CROWN GALL TUMORIGENESISR01GM032618 · NIGMS · UNIVERSITY OF WASHINGTON · PI NESTER, EUGENE W · 1985 to 2005
$2.1M
NIGMS NIH HHS GM 32618NIGMS NIH HHS R01 GM032618
6 · The paper itself

Abstract

A citrate synthase (CS) deletion mutant of Agrobacterium tumefaciens C58 is highly attenuated in virulence. The identity of the mutant was initially determined from its amino acid sequence, which is 68% identical to Escherichia coli and 77% identical to Brucella melitensis. The mutant lost all CS enzymatic activity, and a cloned CS gene complemented a CS mutation in Sinorhizobium. The CS mutation resulted in a 10-fold reduction in vir gene expression, which likely accounts for the attenuated virulence. When a plasmid containing a constitutive virG [virG(Con)] locus was introduced into this mutant, the level of vir gene induction was restored to nearly wild-type level. Further, the virG(Con)-complemented CS mutant strain induced tumors that were similar in size and number to those induced by the parental strain. The CS mutation resulted in only a minor reduction in growth rate in a glucose-salts medium. Both the CS mutant and the virG(Con)-complemented CS strain displayed similar growth deficiencies in a glucose-salts medium, indicating that the reduced growth rate of the CS mutant could not be responsible for the attenuated virulence. A search of the genome of A. tumefaciens C58 revealed four proteins, encoded on different replicons, with conserved CS motifs. However, only the locus that when mutated resulted in an attenuated phenotype has CS activity. Mutations in the other three loci did not result in attenuated virulence and any loss of CS activity, and none were able to complement the CS mutation in Sinorhizobium. The function of these loci remains unknown.

Indexed as

Agrobacterium tumefaciensAmino Acid SequenceBase SequenceCitrate (si)-SynthaseConserved SequenceDNA PrimersEscherichia coliGene Expression Regulation, BacterialGene Expression Regulation, EnzymologicGenome, BacterialPeptide FragmentsSequence AlignmentSequence Homology, Amino AcidTranscriptional ActivationVirulenceCitrate (si)-SynthaseDNA PrimersPeptide Fragments

Identifiers

PMID15995199
PMCPMC1169492
OpenAlexW2124930516

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.