Evidence map›Paper›PMID 15994899›Full record

ArticleBiophysical journal2005

X-ray reflectivity studies of cPLA2{alpha}-C2 domains adsorbed onto Langmuir monolayers of SOPC.

Sárka Málková, Fei Long, Robert V Stahelin, Sai V Pingali, Diana Murray, Wonhwa Cho, Mark L Schlossman

Erratum issuedAbstract read
In one paragraph

Article in Biophysical journal, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Molecular mechanism for differential recognition of membrane phosphatidylserine by the immune regulatory receptor Tim4.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Origin and correction of magnetic field inhomogeneity at the interface in biphasic NMR samples.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2012
    Article
  15. Emerging methodologies to investigate lipid-protein interactions.Integrative biology : quantitative biosciences from nano to macro · 2012
    Review
  16. Article
  17. Review
  18. Phospholipase A2 biochemistry.Cardiovascular drugs and therapy · 2009
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

7 authors.

Sárka MálkováDepartment of Physics, Department of Chemistry, University of Illinois at Chicago, Chicago, Illinois, USA.
Fei Long
Robert V Stahelin
Sai V Pingali
Diana Murray
Wonhwa Cho
Mark L Schlossman

Funding

Studies of Eicosanoid Biosynthetic ProteinsR01GM052598 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI CHO, WONHWA · 1996 to 2013
$3.7M
STRUCTURE/FUNCTION STUDIES OF MEMBRANE BINDING PROTEINSR01GM053987 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI CHO, WONHWA · 1997 to 2004
$1.2M
NIGMS NIH HHS GM52598NIGMS NIH HHS GM53987NIGMS NIH HHS R01 GM052598NIGMS NIH HHS R01 GM053987
6 · The paper itself

Abstract

X-ray reflectivity is used to study the interaction of C2 domains of cytosolic phospholipase A(2) (cPLA(2)alpha-C2) with a Langmuir monolayer of 1-stearoyl-2-oleoyl-sn-glycero-3-phosphocholine (SOPC) supported on a buffered aqueous solution containing Ca(2+). The reflectivity is analyzed in terms of the known crystallographic structure of cPLA(2)alpha-C2 domains and a slab model representing the lipid layer to yield an electron density profile of the lipid layer and bound C2 domains. This new method of analysis determines the angular orientation and penetration depth of the cPLA(2)alpha-C2 domains bound to the SOPC monolayer, information not available from the standard slab model analysis of x-ray reflectivity. The best-fit orientation places the protein-bound Ca(2+) ions within 1 A of the lipid phosphate group (with an accuracy of +/-3 A). Hydrophobic residues of the calcium-binding loops CBL1 and CBL3 penetrate deepest into the lipid layer, with a 2 A penetration into the tailgroup region. X-ray measurements with and without the C2 domain indicate that there is a loss of electrons in the headgroup region of the lipid monolayer upon binding of the domains. We suggest that this is due to a loss of water molecules bound to the headgroup. Control experiments with a non-calcium buffer and with domain mutants confirm that the cPLA(2)alpha-C2 binding to the SOPC monolayer is Ca(2+)-dependent and that the hydrophobic residues in the calcium-binding loops are critical for membrane binding. These results indicate that an entropic component (due to water loss) as well as electrostatic and hydrophobic interactions contributes to the binding mechanism.

Indexed as

1,2-DipalmitoylphosphatidylcholineAdsorptionAnimalsBiophysicsBuffersCalciumCrystallography, X-RayElectronsEntropyGroup IV Phospholipases A2IonsLipid BilayersLipidsMicroscopy, FluorescenceModels, BiologicalModels, Molecular1,2-Dipalmitoylphosphatidylcholine1-stearoyl-2-oleoyl-sn-glycero-3-phosphocholineBuffersCalciumGroup IV Phospholipases A2IonsLipid BilayersLipidsOxygenPhosphatidylcholinesPhospholipases AProtein Kinase CProteins

Identifiers

PMID15994899
PMCPMC1366689

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.