Evidence map›Paper›PMID 15987893›Full record

ArticleProtein science : a publication of the Protein Society2005

Solution structure of thioredoxin h1 from Arabidopsis thaliana.

Francis C Peterson, Betsy L Lytle, Sujatha Sampath, Dmitriy Vinarov, Ejan Tyler, Mark Shahan, John L Markley, Brian F Volkman

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 32 citations in OpenAlex.

  1. Review
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  9. BioMagResBank.Nucleic acids research · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Francis C PetersonDepartment of Biochemistry and Center for Eurkaryotic Structural Genomics, Medical College of Wisconsin, Milwaukee, WI 53226, USA.
Betsy L Lytle
Sujatha Sampath
Dmitriy Vinarov
Ejan Tyler
Mark Shahan
John L Markley
Brian F Volkman
University of Wisconsin–Madison · USMedical College of Wisconsin · US

Funding

Center for Eukaryotic Structural GenomicsP50GM064598 · NIGMS · UNIVERSITY OF WISCONSIN MADISON · PI MARKLEY, JOHN L · 2001 to 2004
$23.7M
NIGMS NIH HHS 1 P50 GM 64598NIGMS NIH HHS P50 GM064598
6 · The paper itself

Abstract

Present in virtually every species, thioredoxins catalyze disulfide/dithiol exchange with various substrate proteins. While the human genome contains a single thioredoxin gene, plant thioredoxins are a complex protein family. A total of 19 different thioredoxin genes in six subfamilies has emerged from analysis of the Arabidopsis thaliana genome. Some function specifically in mitochondrial and chloroplast redox signaling processes, but target substrates for a group of eight thioredoxin proteins comprising the h subfamily are largely uncharacterized. In the course of a structural genomics effort directed at the recently completed A. thaliana genome, we determined the structure of thioredoxin h1 (At3g51030.1) in the oxidized state. The structure, defined by 1637 NMR-derived distance and torsion angle constraints, displays the conserved thioredoxin fold, consisting of a five-stranded beta-sheet flanked by four helices. Redox-dependent chemical shift perturbations mapped primarily to the conserved WCGPC active-site sequence and other nearby residues, but distant regions of the C-terminal helix were also affected by reduction of the active-site disulfide. Comparisons of the oxidized A. thaliana thioredoxin h1 structure with an h-type thioredoxin from poplar in the reduced state revealed structural differences in the C-terminal helix but no major changes in the active site conformation.

Indexed as

Models, MolecularArabidopsis ProteinsNuclear Magnetic Resonance, BiomolecularOxidation-ReductionPlantsProtein TransportSolutionsStructural Homology, ProteinThioredoxin hThioredoxinsArabidopsis ProteinsATTRX1 protein, ArabidopsisSolutionsThioredoxin hThioredoxins

Identifiers

PMID15987893
PMCPMC2279331
OpenAlexW2104772965

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.