Evidence map›Paper›PMID 15987790›Full record

ArticleNucleic acids research2005

Distinct regions of RPB11 are required for heterodimerization with RPB3 in human and yeast RNA polymerase II.

Wagane J Benga, Sylvie Grandemange, George V Shpakovski, Elena K Shematorova, Claude Kedinger, Marc Vigneron

Open access · goldAbstract readComparative Study
In one paragraph

Article in Nucleic acids research, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Wagane J BengaUnité Mixte de Recherche 7100 CNRS-Université Louis Pasteur, Ecole Supérieure de Biotechnologie de Strasbourg Boulevard Sébastien Brandt, BP 10413, 67412 Illkirch Cedex, France.
Sylvie Grandemange
George V Shpakovski
Elena K Shematorova
Claude Kedinger
Marc Vigneron
Centre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In Saccharomyces cerevisiae, RNA polymerase II assembly is probably initiated by the formation of the RPB3-RPB11 heterodimer. RPB3 is encoded by a single copy gene in the yeast, mouse and human genomes. The RPB11 gene is also unique in yeast and mouse, but in humans a gene family has been identified that potentially encodes several RPB11 proteins differing mainly in their C-terminal regions. We compared the abilities of both yeast and human proteins to heterodimerize. We show that the yeast RPB3/RPB11 heterodimer critically depends on the presence of the C-terminal region of RPB11. In contrast, the human heterodimer tolerates significant changes in RPB11 C-terminus, allowing two human RPB11 variants to heterodimerize with the same efficiency with RPB3. In keeping with this observation, the interactions between the conserved N-terminal 'alpha-motifs' is much more important for heterodimerization of the human subunits than for those in yeast. These data indicate that the heterodimerization interfaces have been modified during the course of evolution to allow a recent diversification of the human RPB11 subunits that remains compatible with heterodimerization with RPB3.

Indexed as

Amino Acid MotifsAmino Acid SequenceCell ProliferationConserved SequenceDimerizationHumansMolecular Sequence DataMutationProtein Structure, TertiaryProtein SubunitsRNA Polymerase IISaccharomyces cerevisiae ProteinsTwo-Hybrid System TechniquesPOLR2C protein, humanPOLR2J protein, humanProtein SubunitsRNA Polymerase IIRPB11 protein, S cerevisiaeRPB3 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID15987790
PMCPMC1159119
OpenAlexW2074193989

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.