ArticleBMC plant biology2005
Expressed sequence tags (ESTs) and simple sequence repeat (SSR) markers from octoploid strawberry (Fragaria x ananassa).
Article in BMC plant biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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Who cites it
17 citing papers in PubMed, 57 citations in OpenAlex.
- De novo assembly of Iron-Heart Cunninghamia lanceolata transcriptome and EST-SSR marker development for genetic diversity analysis.PloS one · 2023Article
- Development of a new set of genic SSR markers in the genus3 Biotech · 2021Article
- The strawberry genome: a complicated past and promising future.Horticulture research · 2019Review
- Identification of a strawberry NPR-like gene involved in negative regulation of the salicylic acid-mediated defense pathway.PloS one · 2018Article
- FcLDP1, a Gene Encoding a Late Embryogenesis Abundant (LEA) Domain Protein, Responds to Brassinosteroids and Abscisic Acid during the Development of Fruits in Fragaria chiloensis.Frontiers in plant science · 2016Article
- Somatic embryogenesis, tetraploidy, and variant leaf morphology in transgenic diploid strawberry (Fragaria vesca subspecies vesca 'Hawaii 4').BMC plant biology · 2014Article
- Molecular genetics and genomics of the Rosoideae: state of the art and future perspectives.Horticulture research · 2014Review
- Floral transcriptome sequencing for SSR marker development and linkage map construction in the tea plant (Camellia sinensis).PloS one · 2013Article
- Generation and analysis of ESTs from strawberry (Fragaria xananassa) fruits and evaluation of their utility in genetic and molecular studies.BMC genomics · 2010Article
- Analysis of expressed sequence tags from Prunus mume flower and fruit and development of simple sequence repeat markers.BMC genetics · 2010Article
- Identification of flowering genes in strawberry, a perennial SD plant.BMC plant biology · 2009Article
- Identification, characterization and utilization of unigene derived microsatellite markers in tea (Camellia sinensis L.).BMC plant biology · 2009Article
- Development of ChillPeach genomic tools and identification of cold-responsive genes in peach fruit.Plant molecular biology · 2008Article
- A blackberry (Rubus L.) expressed sequence tag library for the development of simple sequence repeat markers.BMC plant biology · 2008Article
- Characterization of LF9, an octoploid strawberry genotype selected for rapid regeneration and transformation.Planta · 2006Article
- An enhanced microsatellite map of diploid Fragaria.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2006Article
- ASAP: amplification, sequencing & annotation of plastomes.BMC genomics · 2005Article
Corrections and comments
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Authors and funding
7 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundCultivated strawberry (Fragaria x ananassa) represents one of the most valued fruit crops in the United States. Despite its economic importance, the octoploid genome presents a formidable barrier to efficient study of genome structure and molecular mechanisms that underlie agriculturally-relevant traits. Many potentially fruitful research avenues, especially large-scale gene expression surveys and development of molecular genetic markers have been limited by a lack of sequence information in public databases. As a first step to remedy this discrepancy a cDNA library has been developed from salicylate-treated, whole-plant tissues and over 1800 expressed sequence tags (EST's) have been sequenced and analyzed.
resultsA putative unigene set of 1304 sequences--133 contigs and 1171 singlets--has been developed, and the transcripts have been functionally annotated. Homology searches indicate that 89.5% of sequences share significant similarity to known/putative proteins or Rosaceae ESTs. The ESTs have been functionally characterized and genes relevant to specific physiological processes of economic importance have been identified. A set of tools useful for SSR development and mapping is presented.
conclusionSequences derived from this effort may be used to speed gene discovery efforts in Fragaria and the Rosaceae in general and also open avenues of comparative mapping. This report represents a first step in expanding molecular-genetic analyses in strawberry and demonstrates how computational tools can be used to optimally mine a large body of useful information from a relatively small data set.
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