Evidence map›Paper›PMID 15985163›Full record

ArticleBMC molecular biology2005

Cloning and characterization of cDNAs encoding putative CTCFs in the mosquitoes, Aedes aegypti and Anopheles gambiae.

Christine E Gray, Craig J Coates

Open access · hybridAbstract readComparative Study
In one paragraph

Article in BMC molecular biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Exogenous gypsy insulator sequences modulate transgene expression in the malaria vector mosquito, Anopheles stephensi.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  6. Article
  7. The chromatin insulator CTCF and the emergence of metazoan diversity.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Christine E GrayDepartment of Entomology, Texas A&M University, MS 2475, College Station, TX 77843-2475, USA. c-gray@tamu.edu
Craig J Coates
Texas A&M University · US

Funding

ENHANCER AND BOUNDARY ELEMENTS FOR MOSQUITO TRANSGENESISR01AI046432 · NIAID · TEXAS A&M UNIVERSITY SYSTEM · PI COATES, CRAIG J. · 2000 to 2004
$1.1M
NIAID NIH HHS R01 AI046432NIAID NIH HHS R01 AI46432
6 · The paper itself

Abstract

backgroundOne of the many ascribed functions of CCCTC-binding factor (CTCF) in vertebrates is insulation of genes via enhancer-blocking. Insulation allows genes to be shielded from "cross-talk" with neighboring regulatory elements. As such, endogenous insulator sequences would be valuable elements to enable stable transgene expression. Recently, CTCF joined Su(Hw), Zw5, BEAF32 and GAGA factor as a protein associated with insulator activity in the fruitfly, Drosophila melanogaster. To date, no known insulators have been described in mosquitoes.

resultsWe have identified and characterized putative CTCF homologs in the medically-important mosquitoes, Aedes aegypti and Anopheles gambiae. These genes encode polypeptides with eleven C2H2 zinc fingers that show significant similarity to those of vertebrate CTCFs, despite at least 500 million years of divergence. The mosquito CTCFs are constitutively expressed and are upregulated in early embryos and in the ovaries of blood-fed females. We have uncovered significant bioinformatics evidence that CTCF is widespread, at least among Drosophila species. Finally, we show that the An. gambiae CTCF binds two known insulator sequences.

conclusionMosquito CTCFs are likely orthologous to the widely-characterized vertebrate CTCFs and potentially also serve an insulating function. As such, CTCF may provide a powerful tool for improving transgene expression in these mosquitoes through the identification of endogenous binding sites.

Indexed as

AedesAmino Acid SequenceAnimalsAnophelesCCCTC-Binding FactorCells, CulturedChickensCloning, MolecularDNA-Binding ProteinsDNA, ComplementaryDrosophilaFemaleGene Expression ProfilingImmune SeraMolecular Sequence DataOvaryCCCTC-Binding FactorDNA-Binding ProteinsDNA, ComplementaryImmune SeraRepressor Proteins

Identifiers

PMID15985163
PMCPMC1174870
OpenAlexW2164665603

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.