Evidence map›Paper›PMID 15983066›Full record

ArticleThe Journal of experimental medicine2005

Promiscuous gene expression in thymic epithelial cells is regulated at multiple levels.

Jens Derbinski, Jana Gäbler, Benedikt Brors, Sascha Tierling, Sunitha Jonnakuty, Manfred Hergenhahn, Leena Peltonen, Jörn Walter, Bruno Kyewski

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 245 papers.

0numbers the graph read from it
0cells of the map it votes in
245citing papers in PubMed
14.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

245 citing papers in PubMed, 538 citations in OpenAlex.

  1. Trial
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  13. The Thymus as a Mirror of the Body's Gene Expression.Advances in experimental medicine and biology · 2025
    Review
  14. Review
  15. Generation and repair of thymic epithelial cells.The Journal of experimental medicine · 2024
    Review
  16. Review
  17. Aire in Autoimmunity.Annual review of immunology · 2024
    Review
  18. Article
  19. Article
  20. Assembling the thymus medulla: Development and function of epithelial cell heterogeneity.BioEssays : news and reviews in molecular, cellular and developmental biology · 2024
    Article

185 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Jens DerbinskiDivision of Developmental Immunology, German Cancer Research Center, D-69120 Heidelberg, Germany.
Jana Gäbler
Benedikt Brors
Sascha Tierling
Sunitha Jonnakuty
Manfred Hergenhahn
Leena Peltonen
Jörn Walter
Bruno Kyewski
German Cancer Research Center · DEHeidelberg University · DESaarland University · DEUniversity of Helsinki · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The role of central tolerance induction has recently been revised after the discovery of promiscuous expression of tissue-restricted self-antigens in the thymus. The extent of tissue representation afforded by this mechanism and its cellular and molecular regulation are barely defined. Here we show that medullary thymic epithelial cells (mTECs) are specialized to express a highly diverse set of genes representing essentially all tissues of the body. Most, but not all, of these genes are induced in functionally mature CD80(hi) mTECs. Although the autoimmune regulator (Aire) is responsible for inducing a large portion of this gene pool, numerous tissue-restricted genes are also up-regulated in mature mTECs in the absence of Aire. Promiscuously expressed genes tend to colocalize in clusters in the genome. Analysis of a particular gene locus revealed expression of clustered genes to be contiguous within such a cluster and to encompass both Aire-dependent and -independent genes. A role for epigenetic regulation is furthermore implied by the selective loss of imprinting of the insulin-like growth factor 2 gene in mTECs. Our data document a remarkable cellular and molecular specialization of the thymic stroma in order to mimic the transcriptome of multiple peripheral tissues and, thus, maximize the scope of central self-tolerance.

Indexed as

AIRE ProteinAnimalsAutoantigensB7-1 AntigenBase SequenceCell DifferentiationDNA, ComplementaryEpithelial CellsFemaleGene Expression RegulationGenomic ImprintingInsulin-Like Growth Factor IMaleMiceMice, Inbred C57BLMice, KnockoutAIRE ProteinAutoantigensB7-1 AntigenDNA, ComplementaryInsulin-Like Growth Factor ITranscription Factors

Identifiers

PMID15983066
PMCPMC2212909
OpenAlexW2160127445

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.