Evidence map›Paper›PMID 15981999›Full record

ArticleBiochemistry2005

Structural consequences of the inhibitor-resistant Ser130Gly substitution in TEM beta-lactamase.

Veena L Thomas, Dasantila Golemi-Kotra, Choonkeun Kim, Sergei B Vakulenko, Shahriar Mobashery, Brian K Shoichet

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
1.1field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 70 citations in OpenAlex.

  1. Review
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  10. Structure-Based Analysis of Cryptic-Site Opening.Structure (London, England : 1993) · 2020
    Article
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  12. Article
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  15. Avibactam and inhibitor-resistant SHV β-lactamases.Antimicrobial agents and chemotherapy · 2015
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Veena L ThomasGraduate Program in Pharmaceutical Sciences and Pharmacogenomics, University of California, San Francisco, San Francisco, California 94143, USA.
Dasantila Golemi-Kotra
Choonkeun Kim
Sergei B Vakulenko
Shahriar Mobashery
Brian K Shoichet
University of Notre Dame · USUniversity of California, San Francisco · US

Funding

RESISTANCE TO BETA-LACTAM ANTIBIOTICSR01AI033170 · NIAID · WAYNE STATE UNIVERSITY · PI MOBASHERY, SHAHRIAR · 1992 to 2010
$3.4M
Structure, Function and Inhibition of Beta-LactamasesR01GM063815 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SHOICHET, BRIAN K · 2001 to 2013
$2.9M
NIAID NIH HHS AI33170NIAID NIH HHS R01 AI033170NIGMS NIH HHS GM63815NIGMS NIH HHS R01 GM063815
6 · The paper itself

Abstract

Beta-lactamase confers resistance to penicillin-like antibiotics by hydrolyzing their beta-lactam bond. To combat these enzymes, inhibitors covalently cross-linking the hydrolytic Ser70 to Ser130 were introduced. In turn, mutant beta-lactamases have emerged with decreased susceptibility to these mechanism-based inhibitors. Substituting Ser130 with glycine in the inhibitor-resistant TEM (IRT) mutant TEM-76 (S130G) prevents the irreversible cross-linking step. Since the completely conserved Ser130 is thought to transfer a proton important for catalysis, its substitution might be hypothesized to result in a nonfunctional enzyme; this is clearly not the case. To investigate how TEM-76 remains active, its structure was determined by X-ray crystallography to 1.40 A resolution. A new water molecule (Wat1023) is observed in the active site, with two configurations located 1.1 and 1.3 A from the missing Ser130 Ogamma; this water molecule likely replaces the Ser130 side-chain hydroxyl in substrate hydrolysis. Intriguingly, this same water molecule is seen in the IRT TEM-32 (M69I/M182T), where Ser130 has moved significantly. TEM-76 shares other structural similarities with various IRTs; like TEM-30 (R244S) and TEM-84 (N276D), the water molecule activating clavulanate for cross-linking (Wat1614) is disordered (in TEM-30 it is actually absent). As expected, TEM-76 has decreased kinetic activity, likely due to the replacement of the Ser130 side-chain hydroxyl with a water molecule. In contrast to the recently determined structure of the S130G mutant in the related SHV-1 beta-lactamase, in TEM-76 the key hydrolytic water (Wat1561) is still present. The conservation of similar accommodations among IRT mutants suggests that resistance arises from common mechanisms, despite the disparate locations of the various substitutions.

Indexed as

beta-Lactamase Inhibitorsbeta-LactamasesEnzyme InhibitorsGlycineKineticsModels, MolecularSerinebeta-Lactamase Inhibitorsbeta-Lactamasesbeta-lactamase TEM-1Enzyme InhibitorsGlycineSerine

Identifiers

PMID15981999
PMCPMC1382196
OpenAlexW2010964231

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.