ArticleNucleic acids research2005
PROTINFO: new algorithms for enhanced protein structure predictions.
Article in Nucleic acids research, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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Who cites it
25 citing papers in PubMed.
- Review
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- Exploring Polypharmacology in Drug Discovery and Repurposing Using the CANDO Platform.Current pharmaceutical design · 2016Review
- Enhanced sampling techniques in molecular dynamics simulations of biological systems.Biochimica et biophysica acta · 2015Review
- Computational modeling suggests dimerization of equine infectious anemia virus Rev is required for RNA binding.Retrovirology · 2014Article
- Anti-inflammatory potential of alpha-linolenic acid mediated through selective COX inhibition: computational and experimental data.Inflammation · 2014Article
- Structure prediction of partial-length protein sequences.International journal of molecular sciences · 2013Article
- The Promise and Challenge of Digital Biology.Journal of bioengineering & biomedical science · 2013Article
- Unbiased, scalable sampling of protein loop conformations from probabilistic priors.BMC structural biology · 2013Article
- Role of exonic variation in chemokine receptor genes on AIDS: CCRL2 F167Y association with pneumocystis pneumonia.PLoS genetics · 2011Article
- GPU-Q-J, a fast method for calculating root mean square deviation (RMSD) after optimal superposition.BMC research notes · 2011Article
- Defining the functional domain of programmed cell death 10 through its interactions with phosphatidylinositol-3,4,5-trisphosphate.PloS one · 2010Article
- Prediction of calcium-binding sites by combining loop-modeling with machine learning.BMC structural biology · 2009Article
- A novel method for predicting and using distance constraints of high accuracy for refining protein structure prediction.Proteins · 2009Article
- Comprehensive computational analysis of Hmd enzymes and paralogs in methanogenic Archaea.BMC evolutionary biology · 2009Article
- Protein meta-functional signatures from combining sequence, structure, evolution, and amino acid property information.PLoS computational biology · 2008Article
- Improving the accuracy of template-based predictions by mixing and matching between initial models.BMC structural biology · 2008Article
- A comparative study of the reported performance of ab initio protein structure prediction algorithms.Journal of the Royal Society, Interface · 2008Article
- Structural and functional characterization of an organic hydroperoxide resistance protein from Mycoplasma gallisepticum.Journal of bacteriology · 2008Article
- The mechanism of outer membrane penetration by the eubacterial flagellum and implications for spirochete evolution.Genes & development · 2007Article
Corrections and comments
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Authors and funding
4 authors.
Funding
Abstract
We describe new algorithms and modules for protein structure prediction available as part of the PROTINFO web server. The modules, comparative and de novo modelling, have significantly improved back-end algorithms that were rigorously evaluated at the sixth meeting on the Critical Assessment of Protein Structure Prediction methods. We were one of four server groups invited to make an oral presentation (only the best performing groups are asked to do so). These two modules allow a user to submit a protein sequence and return atomic coordinates representing the tertiary structure of that protein. The PROTINFO server is available at http://protinfo.compbio.washington.edu.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.