ArticleNucleic acids research2005
TargetIdentifier: a webserver for identifying full-length cDNAs from EST sequences.
Article in Nucleic acids research, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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Who cites it
24 citing papers in PubMed.
- Identification of Splicing Variation Associated with Parental Behavior in the Burying Beetles (Journal of genomics · 2025Article
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- Enriching Genomic Resources and Marker Development from Transcript Sequences ofInternational journal of genomics · 2017Article
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- Genome-wide cataloging and analysis of alternatively spliced genes in cereal crops.BMC genomics · 2015Article
- Transcriptome and genome size analysis of the Venus flytrap.PloS one · 2015Article
- De Novo Assembly and Transcriptome Characterization of Canine Retina Using High-Throughput Sequencing.Genetics research international · 2015Article
- De novo transcriptome of Ischnura elegans provides insights into sensory biology, colour and vision genes.BMC genomics · 2014Article
- An improved genome release (version Mt4.0) for the model legume Medicago truncatula.BMC genomics · 2014Article
- Characterization of the rainbow trout spleen transcriptome and identification of immune-related genes.Frontiers in genetics · 2014Article
- Article
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- Characterization of common carp transcriptome: sequencing, de novo assembly, annotation and comparative genomics.PloS one · 2012Article
- Identification and analysis of muscle-related protein isoforms expressed in the white muscle of the mandarin fish (Siniperca chuatsi).Marine biotechnology (New York, N.Y.) · 2011Article
- Article
- Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies.Genome biology · 2010Article
- Analysis of tarantula skeletal muscle protein sequences and identification of transcriptional isoforms.BMC genomics · 2009Article
- Article
- Pepper EST database: comprehensive in silico tool for analyzing the chili pepper (Capsicum annuum) transcriptome.BMC plant biology · 2008Article
- ESTs analyses of Lampetra japonica liver and comparation transcriptome with the jawed vertebrates.Science in China. Series C, Life sciences · 2008Article
Corrections and comments
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
TargetIdentifier is a webserver that identifies full-length cDNA sequences from the expressed sequence tag (EST)-derived contig and singleton data. To accomplish this TargetIdentifier uses BLASTX alignments as a guide to locate protein coding regions and potential start and stop codons. This information is then used to determine whether the EST-derived sequences include their translation start codons. The algorithm also uses the BLASTX output to assign putative functions to the query sequences. The server is available at https://fungalgenome.concordia.ca/tools/TargetIdentifier.html.
Indexed as
Identifiers
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.