ArticleNucleic acids research2005
PAT: a protein analysis toolkit for integrated biocomputing on the web.
Article in Nucleic acids research, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
15 citing papers in PubMed, 24 citations in OpenAlex.
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- The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis.Nucleic acids research · 2016Article
- Structural and biochemical characterization of the Cop9 signalosome CSN5/CSN6 heterodimer.PloS one · 2014Article
- Workflow management systems for gene sequence analysis and evolutionary studies - A Review.Bioinformation · 2013Article
- Novel cyclotides and uncyclotides with highly shortened precursors from Chassalia chartacea and effects of methionine oxidation on bioactivities.The Journal of biological chemistry · 2012Article
- Group X secreted phospholipase A2 proenzyme is matured by a furin-like proprotein convertase and releases arachidonic acid inside of human HEK293 cells.The Journal of biological chemistry · 2011Article
- Optimizing structural modeling for a specific protein scaffold: knottins or inhibitor cystine knots.BMC bioinformatics · 2010Article
- MOWServ: a web client for integration of bioinformatic resources.Nucleic acids research · 2010Article
- @TOME-2: a new pipeline for comparative modeling of protein-ligand complexes.Nucleic acids research · 2009Article
- KNOTTIN: the knottin or inhibitor cystine knot scaffold in 2007.Nucleic acids research · 2008Article
- The MIGenAS integrated bioinformatics toolkit for web-based sequence analysis.Nucleic acids research · 2006Article
- The MPI Bioinformatics Toolkit for protein sequence analysis.Nucleic acids research · 2006Article
- Effect of protein kinase A on accumulation of brefeldin A-inhibited guanine nucleotide-exchange protein 1 (BIG1) in HepG2 cell nuclei.Proceedings of the National Academy of Sciences of the United States of America · 2006Article
- The Computer-Assisted Sequence Annotation (CASA) workflow for enzyme discovery.Applications in plant sciencesArticle
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
2 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
PAT, for Protein Analysis Toolkit, is an integrated biocomputing server. The main goal of its design was to facilitate the combination of different processing tools for complex protein analyses and to simplify the automation of repetitive tasks. The PAT server provides a standardized web interface to a wide range of protein analysis tools. It is designed as a streamlined analysis environment that implements many features which strongly simplify studies dealing with protein sequences and structures and improve productivity. PAT is able to read and write data in many bioinformatics formats and to create any desired pipeline by seamlessly sending the output of a tool to the input of another tool. PAT can retrieve protein entries from identifier-based queries by using pre-computed database indexes. Users can easily formulate complex queries combining different analysis tools with few mouse clicks, or via a dedicated macro language, and a web session manager provides direct access to any temporary file generated during the user session. PAT is freely accessible on the Internet at http://pat.cbs.cnrs.fr.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.