ArticleNucleic acids research2005
PupasView: a visual tool for selecting suitable SNPs, with putative pathological effect in genes, for genotyping purposes.
Article in Nucleic acids research, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
13 citing papers in PubMed, 306 citations in OpenAlex.
- Human Dendritic Cell Response Signatures Distinguish 1918, Pandemic, and Seasonal H1N1 Influenza Viruses.Journal of virology · 2015Article
- In silico profiling of deleterious amino acid substitutions of potential pathological importance in haemophlia A and haemophlia B.Journal of biomedical science · 2012Article
- Review
- Association analysis of 33 lipoprotein candidate genes in multi-generational families of African ancestry.Journal of lipid research · 2010Article
- Investigation on the role of nsSNPs in HNPCC genes--a bioinformatics approach.Journal of biomedical science · 2009Article
- Genome and proteome annotation: organization, interpretation and integration.Journal of the Royal Society, Interface · 2009Review
- Applications of computational algorithm tools to identify functional SNPs.Functional & integrative genomics · 2008Review
- A novel computational and structural analysis of nsSNPs in CFTR gene.Genomic medicine · 2008Article
- Joint annotation of coding and non-coding single nucleotide polymorphisms and mutations in the SNPeffect and PupaSuite databases.Nucleic acids research · 2008Article
- QuickSNP: an automated web server for selection of tagSNPs.Nucleic acids research · 2007Article
- PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes.Nucleic acids research · 2006Article
- Next station in microarray data analysis: GEPAS.Nucleic acids research · 2006Article
- Bioinformatics and cancer: an essential alliance.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2006Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We have developed a web tool, PupasView, for the selection of single nucleotide polymorphisms (SNPs) with potential phenotypic effect. PupasView constitutes an interactive environment in which functional information and population frequency data can be used as sequential filters over linkage disequilibrium parameters to obtain a final list of SNPs optimal for genotyping purposes. PupasView is the first resource that integrates phenotypic effects caused by SNPs at both the translational and the transcriptional level. PupasView retrieves SNPs that could affect conserved regions that the cellular machinery uses for the correct processing of genes (intron/exon boundaries or exonic splicing enhancers), predicted transcription factor binding sites and changes in amino acids in the proteins for which a putative pathological effect is calculated. The program uses the mapping of SNPs in the genome provided by Ensembl. PupasView will be of much help in studies of multifactorial disorders, where the use of functional SNPs will increase the sensitivity of the identification of the genes responsible for the disease. The PupasView web interface is accessible through http://pupasview.ochoa.fib.es and through http://www.pupasnp.org.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.