ArticleNucleic acids research2005
SNPServer: a real-time SNP discovery tool.
Article in Nucleic acids research, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed.
- NGS-eval: NGS Error analysis and novel sequence VAriant detection tooL.Nucleic acids research · 2015Article
- Article
- Single nucleotide polymorphism discovery from expressed sequence tags in the waterflea Daphnia magna.BMC genomics · 2011Article
- AlignMiner: a Web-based tool for detection of divergent regions in multiple sequence alignments of conserved sequences.Algorithms for molecular biology : AMB · 2010Article
- Discovery and application of insertion-deletion (INDEL) polymorphisms for QTL mapping of early life-history traits in Atlantic salmon.BMC genomics · 2010Article
- An integrated database to enhance the identification of SNP markers for rice.Bioinformation · 2009Article
- "PolyMin": software for identification of the minimum number of polymorphisms required for haplotype and genotype differentiation.BMC bioinformatics · 2009Article
- Perl module and PISE wrappers for the integrated analysis of sequence data and SNP features.BMC research notes · 2009Article
- Dynamic programming for single nucleotide polymorphism ID identification in systematic association studies.The Kaohsiung journal of medical sciences · 2009Article
- AutoSNPdb: an annotated single nucleotide polymorphism database for crop plants.Nucleic acids research · 2009Article
- HaploSNPer: a web-based allele and SNP detection tool.BMC genetics · 2008Article
- Replication slippage versus point mutation rates in short tandem repeats of the human genome.Molecular genetics and genomics : MGG · 2008Article
- Upgrades to StellaBase facilitate medical and genetic studies on the starlet sea anemone, Nematostella vectensis.Nucleic acids research · 2008Article
- Wheat Estimated Transcript Server (WhETS): a tool to provide best estimate of hexaploid wheat transcript sequence.Nucleic acids research · 2007Article
Corrections and comments
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Authors and funding
10 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
SNPServer is a real-time flexible tool for the discovery of SNPs (single nucleotide polymorphisms) within DNA sequence data. The program uses BLAST, to identify related sequences, and CAP3, to cluster and align these sequences. The alignments are parsed to the SNP discovery software autoSNP, a program that detects SNPs and insertion/deletion polymorphisms (indels). Alternatively, lists of related sequences or pre-assembled sequences may be entered for SNP discovery. SNPServer and autoSNP use redundancy to differentiate between candidate SNPs and sequence errors. For each candidate SNP, two measures of confidence are calculated, the redundancy of the polymorphism at a SNP locus and the co-segregation of the candidate SNP with other SNPs in the alignment. SNPServer is available at http://hornbill.cspp.latrobe.edu.au/snpdiscovery.html.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.