Evidence map›Paper›PMID 15980441›Full record

ArticleNucleic acids research2005

DIAL: a web-based server for the automatic identification of structural domains in proteins.

Ganesan Pugalenthi, Govindaraju Archunan, Ramanathan Sowdhamini

Abstract read
In one paragraph

Article in Nucleic acids research, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Protein domain identification methods and online resources.Computational and structural biotechnology journal · 2021
    Review
  4. IpdAB, a virulence factor inProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. 3DSwap: curated knowledgebase of proteins involved in 3D domain swapping.Database : the journal of biological databases and curation · 2011
    Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Ganesan PugalenthiNational Centre for Biological Sciences, Tata Institute of Fundamental Research UAS-GKVK campus, Bellary Road, Bangalore 560 065, Karnataka, India.
Govindaraju Archunan
Ramanathan Sowdhamini

Funding

Wellcome Trust
6 · The paper itself

Abstract

DIAL is a web server for the automatic identification of structural domains given the 3D coordinates of a protein. Delineation of the structural domains and their exact boundaries are the starting points for the better realization of distantly related members of the domain families, for the rational design of the experiments and for clearer understanding of the biological function. The current server can examine crystallographic multiple chains and provide structural domain solutions that can also describe domain swapping events. The server can be accessed from http://www.ncbs.res.in/~faculty/mini/DIAL/home.html. The Supplementary data can be accessed from http://www.ncbs.res.in/~faculty/mini/DIAL/supplement.html.

Indexed as

Protein Structure, TertiarySoftwareAmino Acid MotifsAmino AcidsCrystallography, X-RayInternetModels, MolecularProteinsProtein Structure, SecondaryAmino AcidsProteins

Identifiers

PMID15980441
PMCPMC1160188

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.