Evidence map›Paper›PMID 15972792›Full record

ArticleNucleic acids research2005

The 5'-AT-rich half-site of Maf recognition element: a functional target for bZIP transcription factor Maf.

Tomonori Yoshida, Tsuyoshi Ohkumo, Shoko Ishibashi, Kunio Yasuda

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.4field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Dimorphic Regulation of theAnimals : an open access journal from MDPI · 2024
    Article
  5. Review
  6. Review
  7. Article
  8. Role of MafB in macrophages.Experimental animals · 2020
    Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. MafA and MafB activity in pancreatic β cells.Trends in endocrinology and metabolism: TEM · 2011
    Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Tomonori YoshidaGraduate School of Biological Sciences, Nara Institute of Science and Technology Takayama 8916-5, Ikoma, Nara, 630-0101, Japan. yoshida@salk.edu
Tsuyoshi Ohkumo
Shoko Ishibashi
Kunio Yasuda
Nara Institute of Science and Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Maf family of proteins are a subgroup of basic region-leucine zipper (bZIP) transcription factors, which recognize a long palindromic DNA sequence [TGCTGAC(G)TCAGCA] known as the Maf recognition element (MARE). Interestingly, the functional target enhancer sequences present in the alphaA-crystallin gene contain a well-conserved half-site of MARE rather than the entire palindromic sequence. To resolve how Maf proteins bind to target sequences containing only MARE half-sites, we examined their binding activities using electrophoretic gel mobility shift assays as well as in vitro and in vivo reporter assays. Our results indicate that the 5'-flanking region of the MARE half-site is required for Maf proteins to bind both in vitro and in vivo. The critical 5'-flanking sequences for c-Maf were determined by a selection and amplification binding assay and show a preference for AT-rich nucleotides. Furthermore, sequence analysis of the regulatory regions of several target genes also suggests that AT-rich sequences are important. We conclude that Maf can bind to at least two types of target sequences, the classical MARE (palindrome type) and a 5'-AT-rich MARE half-site (half-site type). Our results provide important new insights into the DNA binding and site selection by bZIP transcription factors.

Indexed as

5' Flanking RegionResponse ElementsAnimalsAT Rich SequenceBase SequenceBinding SitesDNA-Binding ProteinsMaf Transcription FactorsMolecular Sequence DataProtein Structure, SecondaryProto-Oncogene ProteinsProto-Oncogene Proteins c-mafTranscription FactorsXenopus laevisDNA-Binding ProteinsL-MAF protein, Gallus gallusMaf Transcription FactorsProto-Oncogene ProteinsProto-Oncogene Proteins c-mafTranscription Factors

Identifiers

PMID15972792
PMCPMC1156962
OpenAlexW2129858794

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.