Evidence map›Paper›PMID 15972517›Full record

ArticleInfection and immunity2005

Sequence diversity and antigenic variation at the rag locus of Porphyromonas gingivalis.

Lucinda M C Hall, Stuart C Fawell, Xiaoju Shi, Marie-Claire Faray-Kele, Joseph Aduse-Opoku, Robert A Whiley, Michael A Curtis

Open access · greenAbstract read
In one paragraph

Article in Infection and immunity, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 49 citations in OpenAlex.

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  10. Oral dysbiosis induced byJournal of oral microbiology · 2020
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  14. Age and Periodontal Health - Immunological View.Current oral health reports · 2018
    Article
  15. Article
  16. Genetic exchange and reassignment inJournal of oral microbiology · 2018
    Review
  17. Distribution ofPeerJ · 2018
    Article
  18. Frontiers in microbiology · 2017
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Lucinda M C HallCentre for Infectious Disease, Barts and The London School of Medicine and Dentistry, Queen Mary, University of London, Turner Street, London E1 2AD, United Kingdom. l.m.c.hall@qmul.ac.uk
Stuart C Fawell
Xiaoju Shi
Marie-Claire Faray-Kele
Joseph Aduse-Opoku
Robert A Whiley
Michael A Curtis
Queen Mary University of London · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The rag locus of Porphyromonas gingivalis W50 encodes RagA, a predicted tonB-dependent receptor protein, and RagB, a lipoprotein that constitutes an immunodominant outer membrane antigen. The low G+C content of the locus, an association with mobility elements, and an apparent restricted distribution in the species suggested that the locus had arisen by horizontal gene transfer. In the present study, we have demonstrated that there are four divergent alleles of the rag locus. The original rag allele found in W50 was renamed rag-1, while three novel alleles, rag-2 to rag-4, were found in isolates lacking rag-1. The three novel alleles encoded variants of RagA with 63 to 71% amino acid identity to RagA1 and each other and variants of RagB with 43 to 56% amino acid identity. The RagA/B proteins have homology to numerous Bacteroides proteins, including SusC/D, implicated in polysaccharide uptake. Monoclonal and polyclonal antibodies raised against RagB1 of P. gingivalis W50 did not cross-react with proteins from isolates carrying different alleles. In a laboratory collection of 168 isolates, 26% carried rag-1, 36% carried rag-2, 25% carried rag-3, and 14% carried rag-4 (including the type strain, ATCC 33277). Restriction profiles of the locus in different isolates demonstrated polymorphism within each allele, some of which is accounted for by the presence or absence of insertion sequence elements. By reference to a previously published study on virulence in a mouse model (M. L. Laine and A. J. van Winkelhoff, Oral Microbiol. Immunol. 13:322-325, 1998), isolates that caused serious disease in mice were significantly more likely to carry rag-1 than other rag alleles.

Indexed as

Antigenic VariationChromosome MappingAllelesAmino Acid SequenceAnimalsBacterial ProteinsGenome, BacterialMolecular Sequence DataPolymorphism, GeneticPorphyromonas gingivalisRabbitsVirulenceBacterial ProteinsRagA protein, Porphyromonas gingivalisRagB protein, bacteria

Identifiers

PMID15972517
PMCPMC1168617
OpenAlexW2156139680

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.