Evidence map›Paper›PMID 15969742›Full record

ArticleJournal of neurochemistry2005

Astrocyte- and hepatocyte-specific expression of genes from the distal serpin subcluster at 14q32.1 associates with tissue-specific chromatin structures.

Sunita Gopalan, Aneta Kasza, Weili Xu, Daniel L Kiss, Katarzyna M Wilczynska, Russell E Rydel, Tomasz Kordula

Abstract readComparative Study
In one paragraph

Article in Journal of neurochemistry, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Alzheimer's Amyloidopathy: An Alternative Aspect.Journal of Alzheimer's disease : JAD · 2019
    Article
  4. Article
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  7. EGF regulates plasminogen activator inhibitor-1 (PAI-1) by a pathway involving c-Src, PKCdelta, and sphingosine kinase 1 in glioblastoma cells.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Sunita GopalanDepartment of Biochemistry, Medical College of Virginia Campus, Virginia Commonwealth University, Richmond, Virginia 23298, USA.
Aneta Kasza
Weili Xu
Daniel L Kiss
Katarzyna M Wilczynska
Russell E Rydel
Tomasz Kordula
Virginia Commonwealth University Medical Center · USCleveland State University · US

Funding

Astrocyte-specific expression of serpin genesR01NS044118 · NINDS · VIRGINIA COMMONWEALTH UNIVERSITY · PI KORDULA, TOMASZ K · 2004 to 2007
$762k
NINDS NIH HHS NS044118NINDS NIH HHS R01 NS044118
6 · The paper itself

Abstract

The distal serpin subcluster contains genes encoding alpha1-antichymotrypsin (ACT), protein C inhibitor (PCI), kallistatin (KAL) and the KAL-like protein, which are expressed in hepatocytes, but only the act gene is expressed in astrocytes. We show here that the tissue-specific expression of these genes associates with astrocyte- and hepatocyte-specific chromatin structures. In hepatocytes, we identified 12 Dnase I-hypersensitive sites (DHSs) that were distributed throughout the entire subcluster, with the promoters of expressed genes accessible to restriction enzyme digestion. In astrocytes, only six DHSs were located exclusively in the 5' flanking region of the act gene, with its promoter also accessible to restriction enzyme digestion. The acetylation of histone H3 and H4 was found throughout the subcluster in both cell types but this acetylation did not correlate with the expression pattern of these serpin genes. Analysis of histone modifications at the promoters of the act and pci genes revealed that methylation of histone H3 on lysine 4 correlated with their expression pattern in both cell types. In addition, inhibition of methyltransferase activity resulted in suppression of ACT and PCI mRNA expression. We propose that lysine 4 methylation of histone H3 correlates with the tissue-specific expression pattern of these serpin genes.

Indexed as

Chromosomes, Human, Pair 14AstrocytesBlotting, NorthernCarrier ProteinsCells, CulturedChromatinChromatin ImmunoprecipitationChromosome MappingChymotrypsinCytokinesDeoxyribonuclease IEnhancer Elements, GeneticGene Expression RegulationHepatocytesHistonesHumansalpha-chymotrypsinCarrier ProteinsChromatinChymotrypsinCytokinesDeoxyribonuclease IHistoneskallistatinLysineProtein C InhibitorRNA, MessengerSerine Proteinase Inhibitorsserpin B6Serpins

Identifiers

PMID15969742
PMCPMC4557805
OpenAlexW2109757352

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.