Evidence map›Paper›PMID 15968071›Full record

ArticleJournal of bacteriology2005

Genetic evidence that GTP is required for transposition of IS903 and Tn552 in Escherichia coli.

Abbie M Coros, Erin Twiss, Norma P Tavakoli, Keith M Derbyshire

Abstract read
In one paragraph

Article in Journal of bacteriology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Frontiers in microbiology · 2017
    Article
  3. Article
  4. Dissecting the roles of MuB in Mu transposition: ATP regulation of DNA binding is not essential for target delivery.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
  5. Article
  6. Mutation as a stress response and the regulation of evolvability.Critical reviews in biochemistry and molecular biology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Abbie M CorosDivision of Infectious Disease, Wadsworth Center, New York State Department of Health, Albany, New York 12201, USA.
Erin Twiss
Norma P Tavakoli
Keith M Derbyshire

Funding

MOLECULAR ANALYSIS OF THE INSERTION ELEMENT IS903R01GM050699 · NIGMS · WADSWORTH CENTER · PI DERBYSHIRE, KEITH M · 1999 to 2004
$768k
MOLECULAR ANALYSIS OF THE INSERTION ELEMENT IS903R29GM050699 · NIGMS · WADSWORTH CENTER · PI DERBYSHIRE, KEITH M · 1994 to 1998
–
NIGMS NIH HHS GM50699NIGMS NIH HHS R01 GM050699
6 · The paper itself

Abstract

Surprisingly little is known about the role of host factors in regulating transposition, despite the potentially deleterious rearrangements caused by the movement of transposons. An extensive mutant screen was therefore conducted to identify Escherichia coli host factors that regulate transposition. An E. coli mutant library was screened using a papillation assay that allows detection of IS903 transposition events by the formation of blue papillae on a colony. Several host mutants were identified that exhibited a unique papillation pattern: a predominant ring of papillae just inside the edge of the colony, implying that transposition was triggered within these cells based on their spatial location within the colony. These mutants were found to be in pur genes, whose products are involved in the purine biosynthetic pathway. The transposition ring phenotype was also observed with Tn552, but not Tn10, establishing that this was not unique to IS903 and that it was not an artifact of the assay. Further genetic analyses of purine biosynthetic mutants indicated that the ring of transposition was consistent with a GTP requirement for IS903 and Tn552 transposition. Together, our observations suggest that transposition occurs during late stages of colony growth and that transposition occurs inside the colony edge in response to both a gradient of exogenous purines across the colony and the developmental stage of the cells.

Indexed as

DNA Transposable ElementsDNA, BacterialEscherichia coliGuanosine TriphosphatePurinesRecombination, GeneticDNA, BacterialDNA Transposable ElementsGuanosine TriphosphatepurinePurines

Identifiers

PMID15968071
PMCPMC1151752

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.