Evidence map›Paper›PMID 15965734›Full record

ArticleJournal of structural and functional genomics2005

Pilot studies on the parallel production of soluble mouse proteins in a bacterial expression system.

Nathan P Cowieson, Pawel Listwan, Mareike Kurz, Anna Aagaard, Timothy Ravasi, Christine Wells, Thomas Huber, David A Hume, Bostjan Kobe, Jennifer L Martin

Abstract readComparative StudyEvaluation Study
PubMed Publisher
In one paragraph

Article in Journal of structural and functional genomics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Nathan P CowiesonInstitute for Molecular Bioscience, Australia.
Pawel Listwan
Mareike Kurz
Anna Aagaard
Timothy Ravasi
Christine Wells
Thomas Huber
David A Hume
Bostjan Kobe
Jennifer L Martin

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We investigated the parallel production in medium throughput of mouse proteins, using protocols that involved recombinatorial cloning, protein expression screening and batch purification. The methods were scaled up to allow the simultaneous processing of tens or hundreds of protein samples. Scale-up was achieved in two stages. In an initial study, 30 targets were processed manually but with common protocols for all targets. In the second study, these protocols were applied to 96 target proteins that were processed in an automated manner. The success rates at each stage of the study were similar for both the manual and automated approaches. Overall, 15 of the selected 126 target mouse genes (12%) yielded soluble protein products in a bacterial expression system. This success rate compares favourably with other protein screening projects, particularly for eukaryotic proteins, and could be further improved by modifications at the cloning step.

Indexed as

AnimalsCloning, MolecularElectrophoresis, Polyacrylamide GelEscherichia coliMicePilot ProjectsPlasmidsRecombinant Fusion ProteinsRecombinant Fusion Proteins

Identifiers

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.