Evidence map›Paper›PMID 15965243›Full record

ArticleGenetics2005

High functional overlap between MluI cell-cycle box binding factor and Swi4/6 cell-cycle box binding factor in the G1/S transcriptional program in Saccharomyces cerevisiae.

James M Bean, Eric D Siggia, Frederick R Cross

Open access · greenAbstract read
In one paragraph

Article in Genetics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 121 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Deletion of theMicrobiology spectrum · 2021
    Article
  12. Transcription Activator Swi6 Interacts with Mbp1 inJournal of fungi (Basel, Switzerland) · 2021
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Bidirectional histone-gene promoters inFungal biology and biotechnology · 2019
    Article
  19. Article
  20. Review

10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

James M BeanRockefeller University, New York, New York 10021, USA.
Eric D Siggia
Frederick R Cross
Rockefeller University · US

Funding

SPECIFICITY OF CYCLIN FUNCTION AT CELL CYCLE INITIATIONR01GM047238 · NIGMS · ROCKEFELLER UNIVERSITY · PI CROSS, FREDERICK R. · 1993 to 2010
$3.4M
NIGMS NIH HHS GM047238NIGMS NIH HHS R01 GM047238
6 · The paper itself

Abstract

In budding yeast, many genes are induced early in the cell cycle. Induction of these genes has been predominantly attributed to two transcription factors, Swi4-Swi6 (SBF) and Mbp1-Swi6 (MBF). Swi4 and Mbp1 are related DNA-binding proteins with dissimilar target sequences. For most G1/S-regulated genes that we tested in a cdc20 block-release protocol for cell-cycle synchronization, removal of both Swi4 and Mbp1 was necessary and sufficient to essentially eliminate cell-cycle-regulated expression. Detectable SBF or MBF binding sites (SCBs or MCBs) in the promoters or available genome-wide promoter occupancy data do not consistently explain this functional overlap. The overlapping ability of these transcription factors to regulate many promoters with very similar cell-cycle kinetics may provide robustness to the G1/S transcriptional response, but poses a puzzle with respect to promoter-transcription factor specificity. In addition, for some genes, deletion of Mbp1 or Swi4 enhances transcription, suggesting that these factors can also function as transcriptional repressors. Finally, we observe residual G1/S transcriptional regulation in the absence of Swi4 and Mbp1.

Indexed as

Gene Expression Regulation, FungalBinding SitesBlotting, NorthernCell CycleDNA-Binding ProteinsG1 PhaseGene DeletionMutationPromoter Regions, GeneticProtein BindingRNA, MessengerSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsS PhaseTranscription FactorsTranscription, GeneticDNA-Binding ProteinsMBP1 protein, S cerevisiaeRNA, MessengerSaccharomyces cerevisiae ProteinsSWI4 protein, S cerevisiaeSWI6 protein, S cerevisiaeTranscription Factors

Identifiers

PMID15965243
PMCPMC1456534
OpenAlexW2099325822

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.