ArticlePlant physiology2005
The maize root transcriptome by serial analysis of gene expression.
Article in Plant physiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed.
- The Spatial and Temporal Transcriptomic Landscapes of Ginseng, Panax ginseng C. A. Meyer.Scientific reports · 2015Article
- The Aux/IAA gene rum1 involved in seminal and lateral root formation controls vascular patterning in maize (Zea mays L.) primary roots.Journal of experimental botany · 2014Article
- Generation and analysis of expressed sequence tags (ESTs) from halophyte Atriplex canescens to explore salt-responsive related genes.International journal of molecular sciences · 2014Article
- Molecular mapping of the brace root traits in sorghum (Sorghum bicolor L. Moench).Breeding science · 2014Article
- Article
- Transcriptome sequencing and analysis of the fast growing shoots of moso bamboo (Phyllostachys edulis).PloS one · 2013Article
- The panorama of physiological responses and gene expression of whole plant of maize inbred line YQ7-96 at the three-leaf stage under water deficit and re-watering.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2011Article
- The salt-responsive transcriptome of chickpea roots and nodules via deepSuperSAGE.BMC plant biology · 2011Article
- Yeast functional screen to identify genetic determinants capable of conferring abiotic stress tolerance in Jatropha curcas.BMC biotechnology · 2010Article
- Microarray Detection Call Methodology as a Means to Identify and Compare Transcripts Expressed within Syncytial Cells from Soybean (Glycine max) Roots Undergoing Resistant and Susceptible Reactions to the Soybean Cyst Nematode (Heterodera glycines).Journal of biomedicine & biotechnology · 2010Article
- Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing.BMC genomics · 2009Article
- Functional genomics of root growth and development in Arabidopsis.Current opinion in plant biology · 2009Review
- Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription.BMC genomics · 2008Article
- Display of a maize cDNA library on baculovirus infected insect cells.BMC biotechnology · 2008Article
- Magnaporthe grisea infection triggers RNA variation and antisense transcript expression in rice.Plant physiology · 2007Article
- Serial analysis of gene expression in sugarcane (Saccharum spp.) leaves revealed alternative C4 metabolism and putative antisense transcripts.Plant molecular biology · 2007Article
- MAIZEWALL. Database and developmental gene expression profiling of cell wall biosynthesis and assembly in maize.Plant physiology · 2007Article
- ZmGrp3: identification of a novel marker for root initiation in maize and development of a robust assay to quantify allele-specific contribution to gene expression in hybrids.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2006Article
- Identification of drought tolerance determinants by genetic analysis of root response to drought stress and abscisic Acid.Plant physiology · 2006Article
- Unraveling the dynamic transcriptome.The Plant cell · 2006Review
Corrections and comments
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Serial Analysis of Gene Expression was used to define number and relative abundance of transcripts in the root tip of well-watered maize seedlings (Zea mays cv FR697). In total, 161,320 tags represented a minimum of 14,850 genes, based on at least two tags detected per transcript. The root transcriptome has been sampled to an estimated copy number of approximately five transcripts per cell. An extrapolation from the data and testing of single-tag identifiers by reverse transcription-PCR indicated that the maize root transcriptome should amount to at least 22,000 expressed genes. Frequency ranged from low copy number (2-5, 68.8%) to highly abundant transcripts (100-->1,200; 1%). Quantitative reverse transcription-PCR for selected transcripts indicated high correlation with tag frequency. Computational analysis compared this set with known maize transcripts and other root transcriptome models. Among the 14,850 tags, 7,010 (47%) were found for which no maize cDNA or gene model existed. Comparing the maize root transcriptome with that in other plants indicated that highly expressed transcripts differed substantially; less than 5% of the most abundant transcripts were shared between maize and Arabidopsis (Arabidopsis thaliana). Transcript categories highlight functions of the maize root tip. Significant variation in abundance characterizes transcripts derived from isoforms of individual enzymes in biochemical pathways.
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